RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 TLR3O15455 904 aaKnown RBP8.21□□□□□ -1.1
SYNE1-232ENST00000535081 VMACQ2NL98 169 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 GALNT18Q6P9A2 607 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 CNKSR3Q6P9H4 555 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 DBX2Q6ZNG2 339 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 TMEFF1Q8IYR6 380 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 GMIPQ9P107 970 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 TNFRSF10DQ9UBN6 386 aa8.21□□□□□ -1.1
SYNE1-232ENST00000535081 GPR55Q9Y2T6 319 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-232ENST00000535081 FADS2P1A8MWK0 482 aa8.2□□□□□ -1.1
SYNE1-232ENST00000535081 SIGLEC6O43699 453 aa8.2□□□□□ -1.1
SYNE1-232ENST00000535081 MPOP05164 745 aa8.2□□□□□ -1.1
SYNE1-232ENST00000535081 ARL4AP40617 200 aa8.2□□□□□ -1.1
SYNE1-232ENST00000535081 KRTAP10-2P60368 255 aa8.2□□□□□ -1.1
SYNE1-232ENST00000535081 CWF19L2Q2TBE0 894 aaKnown RBP8.2□□□□□ -1.1
SYNE1-232ENST00000535081 HSF5Q4G112 596 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-232ENST00000535081 PRRT2Q7Z6L0 340 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-232ENST00000535081 FAM129CQ86XR2 697 aa8.2□□□□□ -1.1
SYNE1-232ENST00000535081 SORBS3O60504 671 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 CELA3BP08861 270 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 POLR2BP30876 1174 aaKnown RBP8.19□□□□□ -1.1
SYNE1-232ENST00000535081 RAD51AP2Q09MP3 1159 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 KIR3DS1Q14943 382 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 ERICH6BQ5W0A0 696 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 OVOS1Q6IE37 1185 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 SND1Q7KZF4 910 aaKnown RBP eCLIP8.19□□□□□ -1.1
SYNE1-232ENST00000535081 TMC6Q7Z403 805 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 IGDCC3Q8IVU1 814 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 KLHL14Q9P2G3 628 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 PCDHB14Q9Y5E9 798 aa8.19□□□□□ -1.1
SYNE1-232ENST00000535081 WTIPA6NIX2 430 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-232ENST00000535081 TMEM62Q0P6H9 643 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 LDHDQ86WU2 507 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 TRAIPQ9BWF2 469 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 LRRC3Q9BY71 257 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 PRDM14Q9GZV8 571 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 LUC7LQ9NQ29 371 aaKnown RBP8.18□□□□□ -1.1
SYNE1-232ENST00000535081 VTI1BQ9UEU0 232 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 MINPP1Q9UNW1 487 aa8.18□□□□□ -1.1
SYNE1-232ENST00000535081 ENDOUP21128 410 aaKnown RBP8.17□□□□□ -1.1
SYNE1-232ENST00000535081 LAPTM5Q13571 262 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 RAB3GAP1Q15042 981 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 ZDHHC14Q8IZN3 488 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 SYT8Q8NBV8 401 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 ZNF512BQ96KM6 892 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-232ENST00000535081 BRMS1Q9HCU9 246 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 MRS2Q9HD23 443 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 CHST7Q9NS84 486 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 KBTBD4Q9NVX7 518 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 ERVK13-1Q9NX77 482 aa8.17□□□□□ -1.1
SYNE1-232ENST00000535081 CLEC3AO75596 197 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 ATE1O95260 518 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 PRKCAP17252 672 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 CDCP2Q5VXM1 449 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 FBXO33Q7Z6M2 555 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 SLCO6A1Q86UG4 719 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 TEPSINQ96N21 525 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 CNNM2Q9H8M5 875 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 ROBO2Q9HCK4 1378 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 TNFRSF12AQ9NP84 129 aa8.16□□□□□ -1.1
SYNE1-232ENST00000535081 NFKB2Q00653 900 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 FBXL19Q6PCT2 694 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 LINC01356Q8N9X3 169 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 PWWP2AQ96N64 755 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 CDADC1Q9BWV3 514 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 ADAM7Q9H2U9 754 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 KCNQ5Q9NR82 932 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 PCDHA5Q9Y5H7 936 aa8.15□□□□□ -1.1
SYNE1-232ENST00000535081 A0A1W2PQ45 241 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-232ENST00000535081 A0A1W2PQY0 241 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 NUDT19A8MXV4 375 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 ZNF205O95201 554 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 CCNFP41002 786 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 CYP4F8P98187 520 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 DNAJC14Q6Y2X3 702 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-232ENST00000535081 NUP43Q8NFH3 380 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 ACSL6Q9UKU0 697 aa8.14□□□□□ -1.11
SYNE1-232ENST00000535081 SUPT16HQ9Y5B9 1047 aaKnown RBP8.14□□□□□ -1.11
SYNE1-232ENST00000535081 ZC3H12DA2A288 527 aaKnown RBP8.13□□□□□ -1.11
SYNE1-232ENST00000535081 MEIS1O00470 390 aa8.13□□□□□ -1.11
SYNE1-232ENST00000535081 BMP8BP34820 402 aa8.13□□□□□ -1.11
SYNE1-232ENST00000535081 CEBPAP49715 358 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-232ENST00000535081 NLRC3Q7RTR2 1065 aa8.13□□□□□ -1.11
SYNE1-232ENST00000535081 ERMP1Q7Z2K6 904 aa8.13□□□□□ -1.11
SYNE1-232ENST00000535081 ATG4CQ96DT6 458 aa8.13□□□□□ -1.11
SYNE1-232ENST00000535081 MKRN2Q9H000 416 aaKnown RBP8.13□□□□□ -1.11
SYNE1-232ENST00000535081 BUB1BO60566 1050 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-232ENST00000535081 ADRB1P08588 477 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 CTSKP43235 329 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 RPTNQ6XPR3 784 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 FRMD5Q7Z6J6 570 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 GGNQ86UU5 652 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 EHMT1Q9H9B1 1298 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 COPRSQ9NQ92 184 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 GFOD1Q9NXC2 390 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 IMPACTQ9P2X3 320 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 PCDHB12Q9Y5F1 795 aa8.12□□□□□ -1.11
SYNE1-232ENST00000535081 GREM1O60565 184 aa8.11□□□□□ -1.11
SYNE1-232ENST00000535081 EIF4A3P38919 411 aaKnown RBP8.11□□□□□ -1.11
SYNE1-232ENST00000535081 CRKP46108 304 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms