RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 ITFG2Q969R8 447 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 SH3GL2Q99962 352 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 PAGR1Q9BTK6 254 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 KCNH3Q9ULD8 1083 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 MYH14Q7Z406 1995 aaKnown RBP21.49■■□□□ 1.03
SMPD1-210ENST00000534405 IGHMBP2P38935 993 aaKnown RBP21.49■■□□□ 1.03
SMPD1-210ENST00000534405 CCDC148Q8NFR7 591 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 LRP2BPQ9P2M1 347 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 NIP7Q9Y221 180 aaKnown RBP eCLIP21.49■■□□□ 1.03
SMPD1-210ENST00000534405 SAMM50Q9Y512 469 aa21.49■■□□□ 1.03
SMPD1-210ENST00000534405 BCL9LQ86UU0 1499 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 BMP6P22004 513 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 MTF1Q14872 753 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 CEP85LQ5SZL2 805 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 SDR42E1Q8WUS8 393 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 NACAP1Q9BZK3 213 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 WNK3Q9BYP7 1800 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 A6NNZ2 444 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 GNAT2P19087 354 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 USP14P54578 494 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 NR5A1Q13285 461 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 TUBB8Q3ZCM7 444 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 TLDC1Q6P9B6 456 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 ARMC2Q8NEN0 867 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 MAGEC3Q8TD91 643 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 VCPKMTQ9H867 229 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 ETAA1Q9NY74 926 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 PCDHA5Q9Y5H7 936 aa21.48■■□□□ 1.03
SMPD1-210ENST00000534405 TFRCP02786 760 aaKnown RBP21.47■■□□□ 1.03
SMPD1-210ENST00000534405 ANKRD18AQ8IVF6 992 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 CRACR2BQ8N4Y2 399 aaPredicted RBP21.47■■□□□ 1.03
SMPD1-210ENST00000534405 KRI1Q8N9T8 703 aaKnown RBP21.47■■□□□ 1.03
SMPD1-210ENST00000534405 SH3GL3Q99963 347 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 CRACR2AQ9BSW2 395 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 LOC102724428A0A0B4J2F2 783 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 CLNS1AP54105 237 aaKnown RBP21.47■■□□□ 1.03
SMPD1-210ENST00000534405 SIK1P57059 783 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 ATP2B2Q01814 1243 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 PDE4BQ07343 736 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 PARP10Q53GL7 1025 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 AP1ARQ63HQ0 302 aa21.47■■□□□ 1.03
SMPD1-210ENST00000534405 NAPGQ99747 312 aaPredicted RBP21.47■■□□□ 1.03
SMPD1-210ENST00000534405 DDX20Q9UHI6 824 aaKnown RBP21.47■■□□□ 1.03
SMPD1-210ENST00000534405 ECM2O94769 699 aaPredicted RBP21.46■■□□□ 1.03
SMPD1-210ENST00000534405 CYP7A1P22680 504 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 MDM2Q00987 491 aaPredicted RBP21.46■■□□□ 1.03
SMPD1-210ENST00000534405 PPARAQ07869 468 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 SLC35F6Q8N357 371 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 OXER1Q8TDS5 423 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 NUP133Q8WUM0 1156 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 WASF1Q92558 559 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 SHISA4Q96DD7 197 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 PANX2Q96RD6 677 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 ACTN3Q08043 901 aaPredicted RBP21.46■■□□□ 1.03
SMPD1-210ENST00000534405 CCDC40Q4G0X9 1142 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 ZNF654Q8IZM8 581 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 FBXO2Q9UK22 296 aaPredicted RBP21.46■■□□□ 1.03
SMPD1-210ENST00000534405 PCDHB6Q9Y5E3 794 aa21.46■■□□□ 1.03
SMPD1-210ENST00000534405 SOWAHDA6NJG2 315 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 MICALCLQ6ZW33 695 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 TRIM22Q8IYM9 498 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 RTL9Q8NET4 1388 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 NAA15Q9BXJ9 866 aaKnown RBP21.45■■□□□ 1.02
SMPD1-210ENST00000534405 ABCF2Q9UG63 623 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 COL1A1P02452 1464 aaPredicted RBP21.45■■□□□ 1.02
SMPD1-210ENST00000534405 MINDY4BA8MYZ0 360 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 GYG1P46976 350 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 SKOR1P84550 965 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 NBPF5PQ86XG9 351 aaPredicted RBP21.45■■□□□ 1.02
SMPD1-210ENST00000534405 FANCBQ8NB91 859 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 RABEP2Q9H5N1 569 aa21.45■■□□□ 1.02
SMPD1-210ENST00000534405 SPATS2LQ9NUQ6 558 aaKnown RBP21.45■■□□□ 1.02
SMPD1-210ENST00000534405 A0A0U1RQJ8 604 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 TARSL2A2RTX5 802 aaKnown RBP21.44■■□□□ 1.02
SMPD1-210ENST00000534405 NDUFAB1O14561 156 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 PTPREP23469 700 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 SAFBQ15424 915 aaKnown RBP eCLIP21.44■■□□□ 1.02
SMPD1-210ENST00000534405 RAD9BQ6WBX8 426 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 C3orf67Q6ZVT6 689 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 ATRIPQ8WXE1 791 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 ATP6V0A4Q9HBG4 840 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 ERICH2A1L162 156 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 DEXIO95424 95 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 SLC8A3P57103 927 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 AMPD2Q01433 879 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 SEC23AQ15436 765 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 RASGRP2Q7LDG7 609 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 CCDC50Q8IVM0 306 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 MARCH10Q8NA82 808 aaPredicted RBP21.44■■□□□ 1.02
SMPD1-210ENST00000534405 BORCS6Q96GS4 357 aa21.44■■□□□ 1.02
SMPD1-210ENST00000534405 FOXP1Q9H334 677 aaPredicted RBP21.44■■□□□ 1.02
SMPD1-210ENST00000534405 AKAP17AQ02040 695 aaKnown RBP21.43■■□□□ 1.02
SMPD1-210ENST00000534405 DDB1Q16531 1140 aa21.43■■□□□ 1.02
SMPD1-210ENST00000534405 CICQ96RK0 1608 aaPredicted RBP21.43■■□□□ 1.02
SMPD1-210ENST00000534405 TAF1P21675 1872 aa21.43■■□□□ 1.02
SMPD1-210ENST00000534405 ZNF804BA4D1E1 1349 aa21.43■■□□□ 1.02
SMPD1-210ENST00000534405 KDM4FA0A1W2PPD8 638 aa21.43■■□□□ 1.02
SMPD1-210ENST00000534405 GOLGA8KD6RF30 607 aa21.43■■□□□ 1.02
SMPD1-210ENST00000534405 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.43■■□□□ 1.02
SMPD1-210ENST00000534405 TNKSO95271 1327 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms