RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 JAZF1Q86VZ6 243 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 LRRC47Q8N1G4 583 aaKnown RBP4.99□□□□□ -1.61
CSMD3-210ENST00000534172 PRDM14Q9GZV8 571 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 KLHL25Q9H0H3 589 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 PITPNM2Q9BZ72 1349 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 SUSD5O60279 629 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 TP53P04637 393 aaPredicted RBP4.99□□□□□ -1.61
CSMD3-210ENST00000534172 MSMPQ1L6U9 139 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 AGBL5Q8NDL9 886 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 CCDC140Q96MF4 163 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 HSPA12BQ96MM6 686 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 PLAGL2Q9UPG8 496 aa4.99□□□□□ -1.61
CSMD3-210ENST00000534172 LAMC3Q9Y6N6 1575 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 C9IYK1 514 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 PCBP3P57721 371 aaKnown RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 ANGEL2Q5VTE6 544 aaKnown RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 PLD6Q8N2A8 252 aaKnown RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 FAM181AQ8N9Y4 354 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 ZNF512BQ96KM6 892 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 DEPDC7Q96QD5 511 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 DUSP15Q9H1R2 295 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 ANGEL1Q9UNK9 670 aaKnown RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 ZNF451Q9Y4E5 1061 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 KIF21AQ7Z4S6 1674 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 TPP2P29144 1249 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 POU4F1Q01851 419 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 AOC3Q16853 763 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 LONRF2Q1L5Z9 754 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 CDKAL1Q5VV42 579 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 TDRD10Q5VZ19 366 aaKnown RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 SRPK1Q96SB4 655 aaKnown RBP4.98□□□□□ -1.61
CSMD3-210ENST00000534172 ST7Q9NRC1 585 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 SEMA3GQ9NS98 782 aa4.98□□□□□ -1.61
CSMD3-210ENST00000534172 RSF1Q96T23 1441 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-210ENST00000534172 CNTNAP4Q9C0A0 1308 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 PRR33A8MZF0 331 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 LRRN2O75325 713 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 SPINK2P20155 84 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 CD97P48960 835 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 LRP8Q14114 963 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 SV2CQ496J9 727 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 ARHGEF39Q8N4T4 335 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 CELF2-AS1Q8N7Q2 184 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 BVESQ8NE79 360 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 UBE2FQ969M7 185 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 POLR3GLQ9BT43 218 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 HDAC8Q9BY41 377 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 CWC22Q9HCG8 908 aaKnown RBP4.97□□□□□ -1.61
CSMD3-210ENST00000534172 ZSWIM5Q9P217 1185 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 LRP2BPQ9P2M1 347 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 DUSP13Q9UII6 198 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 PCDHB10Q9UN67 800 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 SUGT1Q9Y2Z0 365 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 H3BS24 57 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 EPHX1P07099 455 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 BMP8BP34820 402 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 DCAF15Q66K64 600 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 LINC00116Q8NCU8 138 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 GFOD1Q9NXC2 390 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 AKT3Q9Y243 479 aa4.97□□□□□ -1.61
CSMD3-210ENST00000534172 MRPL42Q9Y6G3 142 aaKnown RBP4.97□□□□□ -1.61
CSMD3-210ENST00000534172 CCDC163A0A0D9SF12 145 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 PRAMEF1O95521 474 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 HOXA10P31260 410 aaPredicted RBP4.96□□□□□ -1.62
CSMD3-210ENST00000534172 ZNF445P59923 1031 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 HSP90AA2PQ14568 343 aaPredicted RBP4.96□□□□□ -1.62
CSMD3-210ENST00000534172 GAB4Q2WGN9 574 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 MTERF2Q49AM1 385 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 ZMYM1Q5SVZ6 1142 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 DHX37Q8IY37 1157 aaKnown RBP4.96□□□□□ -1.62
CSMD3-210ENST00000534172 BCL7CQ8WUZ0 217 aaPredicted RBP4.96□□□□□ -1.62
CSMD3-210ENST00000534172 GPATCH3Q96I76 525 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 PCMTD2Q9NV79 361 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 CBFA2T2O43439 604 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 WNT11O96014 354 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 LTKP29376 864 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 IKZF1Q13422 519 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 FIBCD1Q8N539 461 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 IPO9Q96P70 1041 aaKnown RBP4.96□□□□□ -1.62
CSMD3-210ENST00000534172 SNTG2Q9NY99 539 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 SUSD2Q9UGT4 822 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 EMC9Q9Y3B6 208 aa4.96□□□□□ -1.62
CSMD3-210ENST00000534172 TRBV23OR9-2A0A075B6M9 112 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 CYB5RLQ6IPT4 315 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 TCTN2Q96GX1 697 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 SLC26A8Q96RN1 970 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 SHOXO15266 292 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 SSTR4P31391 388 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 AMPD2Q01433 879 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 DUSP4Q13115 394 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 RASA3Q14644 834 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 TMC3Q7Z5M5 1100 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 CREG2Q8IUH2 290 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 FLCNQ8NFG4 579 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 CCDC39Q9UFE4 941 aa4.95□□□□□ -1.62
CSMD3-210ENST00000534172 CPP00450 1065 aa4.94□□□□□ -1.62
CSMD3-210ENST00000534172 HOXC12P31275 282 aa4.94□□□□□ -1.62
CSMD3-210ENST00000534172 SLC10A6Q3KNW5 377 aa4.94□□□□□ -1.62
CSMD3-210ENST00000534172 TRIM59Q8IWR1 403 aa4.94□□□□□ -1.62
CSMD3-210ENST00000534172 LRRN4CLQ8ND94 238 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms