RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 C16orf86Q6ZW13 317 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 RPAP2Q8IXW5 612 aaPredicted RBP7.89□□□□□ -1.15
CD44-221ENST00000526000 REPS2Q8NFH8 660 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-221ENST00000526000 HAUS7Q99871 368 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-221ENST00000526000 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.89□□□□□ -1.15
CD44-221ENST00000526000 HOMER2Q9NSB8 354 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 ZNF214Q9UL59 606 aaPredicted RBP7.89□□□□□ -1.15
CD44-221ENST00000526000 ADAMTS5Q9UNA0 930 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 MTMR7Q9Y216 660 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 CUL9Q8IWT3 2517 aa7.89□□□□□ -1.15
CD44-221ENST00000526000 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.88□□□□□ -1.15
CD44-221ENST00000526000 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.88□□□□□ -1.15
CD44-221ENST00000526000 GSG1L2A8MUP6 293 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 KIAA0355O15063 1070 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 ADAMTS4O75173 837 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 HMMRO75330 724 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 NDUFB10O96000 172 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 CSF2RAP15509 400 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 RASA1P20936 1047 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 CYP2C18P33260 490 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 CNTN2Q02246 1040 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 ACVR2BQ13705 512 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 GNASQ5JWF2 1037 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 ZNF365Q70YC5 407 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 C16orf59Q7L2K0 433 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 ZNF444Q8N0Y2 327 aaPredicted RBP7.88□□□□□ -1.15
CD44-221ENST00000526000 ANKRD35Q8N283 1001 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 KLHDC9Q8NEP7 349 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 STRBPQ96SI9 672 aaKnown RBP7.88□□□□□ -1.15
CD44-221ENST00000526000 SLF1Q9BQI6 1058 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 ZNF576Q9H609 170 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 ZBTB40Q9NUA8 1239 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.88□□□□□ -1.15
CD44-221ENST00000526000 RAPGEFL1Q9UHV5 662 aa7.88□□□□□ -1.15
CD44-221ENST00000526000 SYNRGQ9UMZ2 1314 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.87□□□□□ -1.15
CD44-221ENST00000526000 RBAK-RBAKDNI3L0D1 243 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 ADCY6O43306 1168 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 TIMP1P01033 207 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 ASGR1P07306 291 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 IGFBP4P22692 258 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 DNAJB2P25686 324 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 UBE3CQ15386 1083 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 CCDC144BQ3MJ40 725 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 TMEM240Q5SV17 173 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 TMEM63BQ5T3F8 832 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 C20orf194Q5TEA3 1177 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 C1orf53Q5VUE5 145 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 TMED8Q6PL24 325 aaPredicted RBP7.87□□□□□ -1.15
CD44-221ENST00000526000 EEPD1Q7L9B9 569 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 LRRC47Q8N1G4 583 aaKnown RBP7.87□□□□□ -1.15
CD44-221ENST00000526000 PRPF38AQ8NAV1 312 aaKnown RBP7.87□□□□□ -1.15
CD44-221ENST00000526000 PPP1R13LQ8WUF5 828 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 NUP133Q8WUM0 1156 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 OSBP2Q969R2 916 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 TIFAQ96CG3 184 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 TEX13BQ9BXU2 312 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 PRDM12Q9H4Q4 367 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 INCENPQ9NQS7 918 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 DIS3Q9Y2L1 958 aaKnown RBP7.87□□□□□ -1.15
CD44-221ENST00000526000 A0A0C4DFX4 3053 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 CDK5RAP2Q96SN8 1893 aa7.87□□□□□ -1.15
CD44-221ENST00000526000 COL6A3P12111 3177 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 TMEM232C9JQI7 657 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 M0R2C6 588 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 DYNC1LI2O43237 492 aaPredicted RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 DUSP11O75319 330 aaKnown RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 TDO2P48775 406 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 CCL23P55773 120 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 IKQ13123 557 aaPredicted RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 SLFN13Q68D06 897 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 CCSAPQ6IQ19 270 aaPredicted RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 MFSD5Q6N075 450 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 ZSCAN25Q6NSZ9 544 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 CXCL17Q6UXB2 119 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 CCDC144CPQ8IYA2 1237 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 AGBL1Q96MI9 1066 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 GLT1D1Q96MS3 346 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 PURBQ96QR8 312 aaKnown RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 SEC62Q99442 399 aaKnown RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 TSEN34Q9BSV6 310 aaKnown RBP7.86□□□□□ -1.15
CD44-221ENST00000526000 NKX2-4Q9H2Z4 354 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 SPC25Q9HBM1 224 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 PDGFCQ9NRA1 345 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 NYAP2Q9P242 653 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 NRBP1Q9UHY1 535 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 LAMA3Q16787 3333 aa7.86□□□□□ -1.15
CD44-221ENST00000526000 UMODL1Q5DID0 1318 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 DNAJC25-GNG10A0A024R161 153 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 ARVCFO00192 962 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 RNF113AO15541 343 aaKnown RBP7.85□□□□□ -1.15
CD44-221ENST00000526000 MS4A1P11836 297 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 ALAS1P13196 640 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 MCCP23508 829 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 CDK7P50613 346 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 RABGGTBP53611 331 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 PSMC6P62333 389 aa7.85□□□□□ -1.15
CD44-221ENST00000526000 TFAP4Q01664 338 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms