RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 SLC1A4P43007 532 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 RCAN1P53805 252 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CCNA1P78396 465 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CCDC96Q2M329 555 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 ASPRV1Q53RT3 343 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 TMEM67Q5HYA8 995 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 NFXL1Q6ZNB6 911 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 DHX32Q7L7V1 743 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CCAR1Q8IX12 1150 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 SPICE1Q8N0Z3 855 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CTCFLQ8NI51 663 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CHURC1Q8WUH1 139 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 JAKMIP1Q96N16 626 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 TM6SF1Q9BZW5 370 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 ASCC2Q9H1I8 757 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 RPAP3Q9H6T3 665 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CWC22Q9HCG8 908 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 HOXC10Q9NYD6 342 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CPA4Q9UI42 421 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 FEM1BQ9UK73 627 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CYP46A1Q9Y6A2 500 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 TAF6LQ9Y6J9 622 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CCDC196A0A1B0GTZ2 297 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 POTEB3A0JP26 581 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 PRC1O43663 620 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 FLOT1O75955 427 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 ECM2O94769 699 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 NDUFB10O96000 172 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 BMP3P12645 472 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 LIFRP42702 1097 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 NOVP48745 357 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 GNAQP50148 359 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 STAT2P52630 851 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 PPP2R5BQ15173 497 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 C8orf34Q49A92 452 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 COL13A1Q5TAT6 717 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 SLFN13Q68D06 897 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 POTEBQ6S5H4 581 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 C17orf99Q6UX52 265 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 TMEM92Q6UXU6 159 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 MB21D2Q8IYB1 491 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 LRRC47Q8N1G4 583 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 PNMA1Q8ND90 353 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 ANKS1AQ92625 1134 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 KCNB2Q92953 911 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 HS3ST6Q96QI5 342 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 USP26Q9BXU7 913 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 IL17RBQ9NRM6 502 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 ZSWIM5Q9P217 1185 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 PARP14Q460N5 1801 aa9.05□□□□□ -0.96
LIMCH1-222ENST00000515847 RLFQ13129 1914 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 F5H6K3 240 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 PEX10O60683 326 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 PLA2G6O60733 806 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 PARP1P09874 1014 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 BCRP11274 1271 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 CASTP20810 708 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 HERVK_113P62684 666 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 CAP1Q01518 475 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 SP3Q02447 781 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 KLRC3Q07444 240 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 FAM110CQ1W6H9 321 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 CPLX2Q6PUV4 134 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 CATSPERGQ6ZRH7 1159 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 STOX1Q6ZVD7 989 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 ZNF710Q8N1W2 664 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 ANKRD13CQ8N6S4 541 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 ENAHQ8N8S7 591 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 CD99L2Q8TCZ2 262 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 ERO1AQ96HE7 468 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 MAP3K14Q99558 947 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 P2RX7Q99572 595 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 SLF1Q9BQI6 1058 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 LZTS2Q9BRK4 669 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 RBM28Q9NW13 759 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 SNX14Q9Y5W7 946 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 SLC12A7Q9Y666 1083 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 STK24Q9Y6E0 443 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 A0A0G2JMZ2 1700 aa9.04□□□□□ -0.96
LIMCH1-222ENST00000515847 SPDYE16A6NNV3 312 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 SH2B2O14492 632 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 ZBED4O75132 1171 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 GNRH1P01148 92 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 RPS6KB1P23443 525 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 HOXD10P28358 340 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 OAZ1P54368 228 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 COG2Q14746 738 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 FAM83BQ5T0W9 1011 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 LBX2Q6XYB7 198 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 RASGRP2Q7LDG7 609 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 SPNS2Q8IVW8 549 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 FBXL16Q8N461 479 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 PRPF38AQ8NAV1 312 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 NUP88Q99567 741 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 TMEM47Q9BQJ4 181 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 ZKSCAN3Q9BRR0 538 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 C22orf23Q9BZE7 217 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 ARHGAP39Q9C0H5 1083 aa9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 RBM27Q9P2N5 1060 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-222ENST00000515847 PPP1R9AQ9ULJ8 1098 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms