RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 A0A0C4DFX4 3053 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 SLIT2O94813 1529 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 LMTK2Q8IWU2 1503 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 ANKRD30AQ9BXX3 1397 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 MYOM2P54296 1465 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 MARF1Q9Y4F3 1742 aaKnown RBP7.55□□□□□ -1.2
NUP54-218ENST00000515460 CHD2O14647 1828 aaKnown RBP7.55□□□□□ -1.2
NUP54-218ENST00000515460 FARP2O94887 1054 aaPredicted RBP7.55□□□□□ -1.2
NUP54-218ENST00000515460 EOMESO95936 686 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 PTPN11Q06124 597 aaPredicted RBP7.55□□□□□ -1.2
NUP54-218ENST00000515460 SV2BQ7L1I2 683 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 ARMCX6Q7L4S7 300 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 ZNF507Q8TCN5 953 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 TMEM40Q8WWA1 233 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 PRDM5Q9NQX1 630 aaPredicted RBP7.55□□□□□ -1.2
NUP54-218ENST00000515460 PARD3Q8TEW0 1356 aa7.55□□□□□ -1.2
NUP54-218ENST00000515460 NCOA3Q9Y6Q9 1424 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 FAM50AQ14320 339 aaKnown RBP7.54□□□□□ -1.2
NUP54-218ENST00000515460 LRFN4Q6PJG9 635 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 KSR1Q8IVT5 923 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 KCT2Q8NC54 265 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 TBX22Q9Y458 520 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 ADCY9O60503 1353 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 ADGRB2O60241 1585 aa7.54□□□□□ -1.2
NUP54-218ENST00000515460 TOMM70O94826 608 aa7.53□□□□□ -1.2
NUP54-218ENST00000515460 PKN1Q16512 942 aa7.53□□□□□ -1.2
NUP54-218ENST00000515460 CDKAL1Q5VV42 579 aa7.53□□□□□ -1.2
NUP54-218ENST00000515460 PLPPR2Q96GM1 343 aa7.53□□□□□ -1.2
NUP54-218ENST00000515460 FBRSQ9HAH7 460 aa7.53□□□□□ -1.2
NUP54-218ENST00000515460 TPX2Q9ULW0 747 aaKnown RBP7.53□□□□□ -1.2
NUP54-218ENST00000515460 AK5Q9Y6K8 562 aa7.53□□□□□ -1.2
NUP54-218ENST00000515460 EFCAB6Q5THR3 1501 aa7.52□□□□□ -1.2
NUP54-218ENST00000515460 PIK3C2BO00750 1634 aa7.52□□□□□ -1.2
NUP54-218ENST00000515460 PTPN23Q9H3S7 1636 aa7.52□□□□□ -1.2
NUP54-218ENST00000515460 CEP152O94986 1710 aa7.52□□□□□ -1.2
NUP54-218ENST00000515460 LRRC10BA6NIK2 292 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 LRIG2O94898 1065 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 SLITRK5O94991 958 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 LMNB1P20700 586 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.52□□□□□ -1.21
NUP54-218ENST00000515460 HDXQ7Z353 690 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 NLGN2Q8NFZ4 835 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 DUSP9Q99956 384 aaKnown RBP7.52□□□□□ -1.21
NUP54-218ENST00000515460 FOXQ1Q9C009 403 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 PITPNM2Q9BZ72 1349 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 CNTNAP4Q9C0A0 1308 aa7.52□□□□□ -1.21
NUP54-218ENST00000515460 ADGRL2O95490 1459 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 PLEKHG1Q9ULL1 1385 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 PRR33A8MZF0 331 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 FAM155AB1AL88 458 aaPredicted RBP7.51□□□□□ -1.21
NUP54-218ENST00000515460 FOXN1O15353 648 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 ETF1P62495 437 aaKnown RBP7.51□□□□□ -1.21
NUP54-218ENST00000515460 KCNMB1Q16558 191 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 ZSWIM9Q86XI8 627 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 HSPA12BQ96MM6 686 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 MIPEPQ99797 713 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 COL22A1Q8NFW1 1626 aaPredicted RBP7.51□□□□□ -1.21
NUP54-218ENST00000515460 ZFYVE9O95405 1425 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 ANKRD50Q9ULJ7 1429 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 RIMS2Q9UQ26 1411 aa7.51□□□□□ -1.21
NUP54-218ENST00000515460 ERCC3P19447 782 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 CDK8P49336 464 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 CLCN7P51798 805 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 XPCQ01831 940 aaPredicted RBP7.5□□□□□ -1.21
NUP54-218ENST00000515460 SLBPQ14493 270 aaKnown RBP eCLIP7.5□□□□□ -1.21
NUP54-218ENST00000515460 CCDC85BQ15834 202 aaPredicted RBP7.5□□□□□ -1.21
NUP54-218ENST00000515460 NKG7Q16617 165 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 CYFIP1Q7L576 1253 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.5□□□□□ -1.21
NUP54-218ENST00000515460 FLAD1Q8NFF5 587 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 ORAI2Q96SN7 254 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 SLC38A3Q99624 504 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 CARS2Q9HA77 564 aaKnown RBP7.5□□□□□ -1.21
NUP54-218ENST00000515460 ATP13A1Q9HD20 1204 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 MAPK8IP1Q9UQF2 711 aa7.5□□□□□ -1.21
NUP54-218ENST00000515460 TMEM131LA2VDJ0 1609 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 MAP3K5Q99683 1374 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 DBX1A6NMT0 343 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 RBAK-RBAKDNI3L0D1 243 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 ITGAEP38570 1179 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 PSMD2Q13200 908 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 MLANAQ16655 118 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 GLIPR1L2Q4G1C9 344 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 WIPI1Q5MNZ9 446 aaPredicted RBP7.49□□□□□ -1.21
NUP54-218ENST00000515460 FYB2Q5VWT5 728 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 TTBK2Q6IQ55 1244 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 NPAS4Q8IUM7 802 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 RIN3Q8TB24 985 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 XAGE3Q8WTP9 111 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 WNT10AQ9GZT5 417 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.49□□□□□ -1.21
NUP54-218ENST00000515460 CTNND2Q9UQB3 1225 aa7.49□□□□□ -1.21
NUP54-218ENST00000515460 ZNF503-AS2A6NEH8 195 aa7.48□□□□□ -1.21
NUP54-218ENST00000515460 H3BS24 57 aa7.48□□□□□ -1.21
NUP54-218ENST00000515460 GRIN3BO60391 1043 aa7.48□□□□□ -1.21
NUP54-218ENST00000515460 CBX7O95931 251 aa7.48□□□□□ -1.21
NUP54-218ENST00000515460 RPS26P62854 115 aaKnown RBP7.48□□□□□ -1.21
NUP54-218ENST00000515460 SFRP5Q5T4F7 317 aa7.48□□□□□ -1.21
NUP54-218ENST00000515460 DNAJC14Q6Y2X3 702 aaPredicted RBP7.48□□□□□ -1.21
NUP54-218ENST00000515460 ADAMTS13Q76LX8 1427 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms