RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 WDR66Q8TBY9 1149 aa9.6□□□□□ -0.87
CLDND1-229ENST00000513988 MTUS1Q9ULD2 1270 aa9.6□□□□□ -0.87
CLDND1-229ENST00000513988 RFX7Q2KHR2 1363 aa9.6□□□□□ -0.87
CLDND1-229ENST00000513988 ROBO3Q96MS0 1386 aa9.6□□□□□ -0.87
CLDND1-229ENST00000513988 PPP1R37O75864 691 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 CD4P01730 458 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 PFKMP08237 780 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 PPP2R1AP30153 589 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 SIGLEC14Q08ET2 396 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 KLHDC9Q8NEP7 349 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 PABPC5Q96DU9 382 aaKnown RBP9.59□□□□□ -0.87
CLDND1-229ENST00000513988 MAML3Q96JK9 1138 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 WNT8AQ9H1J5 351 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 SUGCTQ9HAC7 445 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 DDX4Q9NQI0 724 aaKnown RBP9.59□□□□□ -0.87
CLDND1-229ENST00000513988 BTBD7Q9P203 1132 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 FRYLO94915 3013 aa9.59□□□□□ -0.87
CLDND1-229ENST00000513988 GCN1Q92616 2671 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L15C9J2P7 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L13C9JLJ4 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L11C9JVI0 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L18D6R9N7 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L22D6RA61 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L17D6RBQ6 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L19D6RCP7 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L20D6RJB6 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 LDHBP07195 334 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 ASGR1P07306 291 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 ASNSP08243 561 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 PRDX5P30044 214 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L24Q0WX57 530 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 RRP1BQ14684 758 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 SMAD2Q15796 467 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 CCSAPQ6IQ19 270 aaPredicted RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 PCSK9Q8NBP7 692 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 SCLYQ96I15 445 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 NOC4LQ9BVI4 516 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 MYH16Q9H6N6 1097 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 DLL3Q9NYJ7 618 aa9.58□□□□□ -0.88
CLDND1-229ENST00000513988 ASH1LQ9NR48 2969 aaKnown RBP9.58□□□□□ -0.88
CLDND1-229ENST00000513988 STXBP3O00186 592 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 HOXB1P14653 301 aaPredicted RBP9.57□□□□□ -0.88
CLDND1-229ENST00000513988 TAL1P17542 331 aaPredicted RBP9.57□□□□□ -0.88
CLDND1-229ENST00000513988 FOXO4P98177 505 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 USP17L2Q6R6M4 530 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 LMBR1LQ6UX01 489 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 DEFB128Q7Z7B8 93 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 VWCEQ96DN2 955 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 TGS1Q96RS0 853 aaKnown RBP9.57□□□□□ -0.88
CLDND1-229ENST00000513988 EMILIN3Q9NT22 766 aa9.57□□□□□ -0.88
CLDND1-229ENST00000513988 LCHNA4D1U4 455 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 MYADML2A6NDP7 307 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 C6orf222P0C671 652 aaPredicted RBP9.56□□□□□ -0.88
CLDND1-229ENST00000513988 TIGD5Q53EQ6 642 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 LBX2Q6XYB7 198 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 KCNG4Q8TDN1 519 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 ASIC4Q96FT7 647 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 MOV10L1Q9BXT6 1211 aaKnown RBP9.56□□□□□ -0.88
CLDND1-229ENST00000513988 CLDND1Q9NY35 253 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 CTNNA3Q9UI47 895 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 MYH13Q9UKX3 1938 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 MROH5Q6ZUA9 1318 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 CLSPNQ9HAW4 1339 aa9.56□□□□□ -0.88
CLDND1-229ENST00000513988 ELL2O00472 640 aaPredicted RBP9.55□□□□□ -0.88
CLDND1-229ENST00000513988 ZNF865P0CJ78 1059 aaPredicted RBP9.55□□□□□ -0.88
CLDND1-229ENST00000513988 ERCC3P19447 782 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 CST5P28325 142 aaPredicted RBP9.55□□□□□ -0.88
CLDND1-229ENST00000513988 TMPOP42166 694 aaKnown RBP9.55□□□□□ -0.88
CLDND1-229ENST00000513988 ERVK-21P61565 698 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 CLUL1Q15846 466 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 PTPROQ16827 1216 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 ABRAQ8N0Z2 381 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 MRPL38Q96DV4 380 aaKnown RBP9.55□□□□□ -0.88
CLDND1-229ENST00000513988 TINF2Q9BSI4 451 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 ZBED2Q9BTP6 218 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 KRTAP3-3Q9BYR6 98 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 KRTAP3-2Q9BYR7 98 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 PUS3Q9BZE2 481 aaKnown RBP9.55□□□□□ -0.88
CLDND1-229ENST00000513988 SPC25Q9HBM1 224 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 CNPY2Q9Y2B0 182 aa9.55□□□□□ -0.88
CLDND1-229ENST00000513988 MYH2Q9UKX2 1941 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 NAV2Q8IVL1 2488 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 A0A1B0GUL7 405 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 SPDYE16A6NNV3 312 aaPredicted RBP9.54□□□□□ -0.88
CLDND1-229ENST00000513988 MBTPS2O43462 519 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 ZYXQ15942 572 aaKnown RBP9.54□□□□□ -0.88
CLDND1-229ENST00000513988 CCDC30Q5VVM6 783 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 CATSPERGQ6ZRH7 1159 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 SPNS2Q8IVW8 549 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 SHCBP1Q8NEM2 672 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 AGBL1Q96MI9 1066 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 FEZ1Q99689 392 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 HERC5Q9UII4 1024 aaKnown RBP9.54□□□□□ -0.88
CLDND1-229ENST00000513988 FAM184BQ9ULE4 1060 aa9.54□□□□□ -0.88
CLDND1-229ENST00000513988 C2orf72A6NCS6 295 aa9.53□□□□□ -0.88
CLDND1-229ENST00000513988 SOBPA7XYQ1 873 aa9.53□□□□□ -0.88
CLDND1-229ENST00000513988 DUSP11O75319 330 aaKnown RBP9.53□□□□□ -0.88
CLDND1-229ENST00000513988 KCNJ6P48051 423 aa9.53□□□□□ -0.88
CLDND1-229ENST00000513988 NEUROD2Q15784 382 aa9.53□□□□□ -0.88
CLDND1-229ENST00000513988 RSPO4Q2I0M5 234 aaPredicted RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms