RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 SNX25Q9H3E2 840 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 METTL14Q9HCE5 456 aaKnown RBP4.7□□□□□ -1.66
VCAN-209ENST00000513016 USP6P35125 1406 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 IGSF1Q8N6C5 1336 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 POLR3GO15318 223 aaPredicted RBP4.7□□□□□ -1.66
VCAN-209ENST00000513016 SNW1Q13573 536 aaKnown RBP4.7□□□□□ -1.66
VCAN-209ENST00000513016 NDUFAF2Q8N183 169 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 COPRSQ9NQ92 184 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 PSDA5PKW4 1024 aaPredicted RBP4.7□□□□□ -1.66
VCAN-209ENST00000513016 BPIFB4P59827 614 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 GNG11P61952 73 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 TRIML1Q8N9V2 468 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 MLKLQ8NB16 471 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 FAM107BQ9H098 131 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 ARAP3Q8WWN8 1544 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 MKRN3Q13064 507 aaKnown RBP4.7□□□□□ -1.66
VCAN-209ENST00000513016 SEPT14Q6ZU15 432 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 ZNF365Q70YC5 407 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 TRIM50Q86XT4 487 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 PLEKHM2Q8IWE5 1019 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 SP8Q8IXZ3 490 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 SMC5Q8IY18 1101 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 CSGALNACT2Q8N6G5 542 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 SMC1BQ8NDV3 1235 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 SNX21Q969T3 373 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 TTC1Q99614 292 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 C1orf112Q9NSG2 853 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 DONSONQ9NYP3 566 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 CPSF3Q9UKF6 684 aaKnown RBP4.7□□□□□ -1.66
VCAN-209ENST00000513016 SUGT1Q9Y2Z0 365 aa4.7□□□□□ -1.66
VCAN-209ENST00000513016 FRMPD2Q68DX3 1309 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.69□□□□□ -1.66
VCAN-209ENST00000513016 CTAGE15A4D2H0 777 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ASB14A6NK59 587 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 TUBBP07437 444 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 CTAGE8P0CG41 777 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 GAP43P17677 238 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ATP5DP30049 168 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 MMP14P50281 582 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 TBC1D10BQ4KMP7 808 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 CTAGE6Q86UF2 777 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 CTAGE4Q8IX94 777 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 THEM5Q8N1Q8 247 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SRP68Q9UHB9 627 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 SEPT9Q9UHD8 586 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 TNS3Q68CZ2 1445 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 HECW2Q9P2P5 1572 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 TNPO2O14787 897 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 CROCCP2Q86T23 111 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 TICAM2Q86XR7 235 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 FAM8A1Q9UBU6 413 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 IPO11Q9UI26 975 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 FEM1BQ9UK73 627 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ESYT2A0FGR8 921 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 KCNJ6P48051 423 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ITIH3Q06033 890 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 GOLGA8FQ08AF8 430 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 GOLGA8DPQ0D2H9 430 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 CFAP157Q5JU67 520 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 CCDC84Q86UT8 332 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 KLHDC4Q8TBB5 520 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ZNF577Q9BSK1 485 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 DDX25Q9UHL0 483 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 A0A1B0GVL5 298 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 LAD1O00515 517 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SRGAP2BP0DMP2 458 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 CRKP46108 304 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ZNF157P51786 506 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 SLC12A2P55011 1212 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ZBTB16Q05516 673 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SLC9C1Q4G0N8 1177 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 RSRC2Q7L4I2 434 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 GPBP1Q86WP2 473 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 FAM178BQ8IXR5 827 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 DCAF4Q8WV16 495 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ZNF274Q96GC6 653 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 TBC1D32Q96NH3 1257 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 MAGEF1Q9HAY2 307 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 NCAPD2Q15021 1401 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 K7ENM7 598 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ECE2O60344 883 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 OR52Z1P0C646 297 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SCG2P13521 617 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 CIITAP33076 1130 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 MYL5Q02045 173 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 PAK1Q13153 545 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 STXBP2Q15833 593 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 KCNV1Q6PIU1 500 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SESTD1Q86VW0 696 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SYCE1Q8N0S2 351 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 RBM46Q8TBY0 533 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 WRNIP1Q96S55 665 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SMC6Q96SB8 1091 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 TM6SF1Q9BZW5 370 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 TSPYL2Q9H2G4 693 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 DACT1Q9NYF0 836 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 FEZ2Q9UHY8 353 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 PAXBP1Q9Y5B6 917 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 SPDYE16A6NNV3 312 aaPredicted RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 SPDYE2Q495Y8 402 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms