RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MAP3K1Q13233 1512 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 RRS1Q15050 365 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 TTC38Q5R3I4 469 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 SPATA1Q5VX52 437 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 TYW1BQ6NUM6 668 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 NEK9Q8TD19 979 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 GRAMD1AQ96CP6 724 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 TRAIPQ9BWF2 469 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 IKBKBO14920 756 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 PYGLP06737 847 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 POLR2BP30876 1174 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 SERPINB4P48594 390 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 AP2B1P63010 937 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 ART3Q13508 389 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 KIF2CQ99661 725 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 LRRC2Q9BYS8 371 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 CYLC2Q14093 348 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 FSCBQ5H9T9 825 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 SKAP1Q86WV1 359 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 SYT2Q8N9I0 419 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 CXorf56Q9H5V9 222 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 SPTLC3Q9NUV7 552 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 E7ENQ6 273 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 CCDC85AQ96PX6 553 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 BICC1Q9H694 974 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 SLC24A3Q9HC58 644 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 NDUFA13Q9P0J0 144 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 TMEM63CQ9P1W3 806 aa12.25□□□□□ -0.45
LIMCH1-217ENST00000512946 KDM3AQ9Y4C1 1321 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 ACTN1P12814 892 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 BPIFB4P59827 614 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 SLC9C2Q5TAH2 1124 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 EHBP1L1Q8N3D4 1523 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 UNC13AQ9UPW8 1703 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 PNMA6AP0CW24 399 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 AP1B1Q10567 949 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 FLOT2Q14254 428 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 CASP8Q14790 479 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 RPGRQ92834 1020 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 RNF34Q969K3 372 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 PPP1R13BQ96KQ4 1090 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 MOV10L1Q9BXT6 1211 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 DDX28Q9NUL7 540 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 PI4KAP2A4QPH2 592 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 AOC3Q16853 763 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 PI4KAP1Q8N8J0 262 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 TCEANC2Q96MN5 208 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 LRRC37BQ96QE4 947 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 SNRKQ9NRH2 765 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 SEPT3Q9UH03 358 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 SUFUQ9UMX1 484 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 CCDC188H7C350 402 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 STXBP3O00186 592 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 PGRMC1O00264 195 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 RCN2Q14257 317 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 RUBCNQ92622 972 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 HDAC11Q96DB2 347 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 MAML3Q96JK9 1138 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 MBIPQ9NS73 344 aa12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 DIS3Q9Y2L1 958 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-217ENST00000512946 SMARCA4P51532 1647 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 ESYT2A0FGR8 921 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 KCNJ18B7U540 433 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 H0YCG3 227 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 EFCAB14O75071 495 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 IFNA8P32881 189 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 MRPL28Q13084 256 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 KCNJ12Q14500 433 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 UBE3BQ7Z3V4 1068 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 THEMISQ8N1K5 641 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 SCYL1Q96KG9 808 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 TRIM55Q9BYV6 548 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 ANLNQ9NQW6 1124 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 ANGEL1Q9UNK9 670 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 ZNF711Q9Y462 761 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 MAGEB6P1A0A0J9YX57 407 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 HNRNPCL2B2RXH8 293 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 GRM8O00222 908 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 C4BPBP20851 252 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 CMA1P23946 247 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 BFSP1Q12934 665 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 MKRN3Q13064 507 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 SLC44A4Q53GD3 710 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 DIS3L2Q8IYB7 885 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 PRDM11Q9NQV5 511 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 H0Y626 953 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 TRIM16O95361 564 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 NSFP46459 744 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 DEFA1P59665 94 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 DEFA3P59666 94 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 KRR1Q13601 381 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 TAF12Q16514 161 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 RINT1Q6NUQ1 792 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 DDX42Q86XP3 938 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 PARP9Q8IXQ6 854 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 THUMPD2Q9BTF0 503 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 TEX12Q9BXU0 123 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 ZBTB40Q9NUA8 1239 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 WARS2Q9UGM6 360 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 ADAM21Q9UKJ8 722 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms