RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 FAM196BA6NMK8 535 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 NRDCO43847 1150 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 SHMT1P34896 483 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 SHC4Q6S5L8 630 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 CDAN1Q8IWY9 1227 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 DEFB129Q9H1M3 183 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 DNAJC18Q9H819 358 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 SENP2Q9HC62 589 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 TNKSO95271 1327 aa18.33■□□□□ 0.52
SQSTM1-213ENST00000510187 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 CCDC196A0A1B0GTZ2 297 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 MARCKSP29966 332 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 EPHX2P34913 555 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 ARID5BQ14865 1188 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 WTAPQ15007 396 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 SAFBQ15424 915 aaKnown RBP eCLIP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 PTPN14Q15678 1187 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 METTL16Q86W50 562 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 CCAR2Q8N163 923 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 XPO4Q9C0E2 1151 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 TAOK2Q9UL54 1235 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 IQCA1LA6NCM1 817 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 CBFA2T2O43439 604 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 NMT2O60551 498 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 SMC2O95347 1197 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 TUBB4AP04350 444 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 RXRAP19793 462 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 NOSTRINQ8IVI9 506 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 TRIM22Q8IYM9 498 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 PDCL2Q8N4E4 241 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 SLC26A6Q9BXS9 759 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 IFNKQ9P0W0 207 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 PGAP2Q9UHJ9 254 aa18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 HERC5Q9UII4 1024 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 MORC2Q9Y6X9 1032 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-213ENST00000510187 MMP1P03956 469 aa18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 PPP2R5BQ15173 497 aa18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 RTN1Q16799 776 aa18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 USP50Q70EL3 339 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 ENAHQ8N8S7 591 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 KRI1Q8N9T8 703 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 FOXP1Q9H334 677 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.31■□□□□ 0.526e-7■□□□□ 10.6
SQSTM1-213ENST00000510187 HOOK1Q9UJC3 728 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 SIPA1L1O43166 1804 aa18.31■□□□□ 0.52
SQSTM1-213ENST00000510187 MYL5Q02045 173 aa18.3■□□□□ 0.52
SQSTM1-213ENST00000510187 SEC23AQ15436 765 aa18.3■□□□□ 0.52
SQSTM1-213ENST00000510187 NEDD1Q8NHV4 660 aa18.3■□□□□ 0.52
SQSTM1-213ENST00000510187 TEPSINQ96N21 525 aa18.3■□□□□ 0.52
SQSTM1-213ENST00000510187 IL17RBQ9NRM6 502 aa18.3■□□□□ 0.52
SQSTM1-213ENST00000510187 BIN1O00499 593 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 AKR1B1P15121 316 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 SFPQP23246 707 aaKnown RBP eCLIP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 FANCCQ00597 558 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 NCBP1Q09161 790 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 CERKLQ49MI3 558 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 IFIT1BQ5T764 474 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 TATDN1Q6P1N9 297 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 MIGA2Q7L4E1 593 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 SMAP1Q8IYB5 467 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 CCDC17Q96LX7 622 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 TAF1DQ9H5J8 278 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 TCP11L1Q9NUJ3 509 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 PITPNM2Q9BZ72 1349 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 MPHOSPH10O00566 681 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 DEXIO95424 95 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 CCDC178Q5BJE1 867 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 RILPL1Q5EBL4 403 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 KRBA2Q6ZNG9 492 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 TMC6Q7Z403 805 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 DCPSQ96C86 337 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 MYL10Q9BUA6 226 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 KCNH3Q9ULD8 1083 aa18.29■□□□□ 0.52
SQSTM1-213ENST00000510187 USP27XA6NNY8 438 aa18.28■□□□□ 0.52
SQSTM1-213ENST00000510187 POTECB2RU33 542 aa18.28■□□□□ 0.52
SQSTM1-213ENST00000510187 CCP110O43303 1012 aa18.28■□□□□ 0.52
SQSTM1-213ENST00000510187 TBC1D12O60347 775 aa18.28■□□□□ 0.52
SQSTM1-213ENST00000510187 ZNF579Q8NAF0 562 aaKnown RBP18.28■□□□□ 0.52
SQSTM1-213ENST00000510187 PPP2R3BQ9Y5P8 575 aa18.28■□□□□ 0.52
SQSTM1-213ENST00000510187 PLIN4Q96Q06 1357 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 EAPPQ56P03 285 aaPredicted RBP18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 ARMCX5Q6P1M9 558 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 DGKHQ86XP1 1220 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 DIS3L2Q8IYB7 885 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 CNNM3Q8NE01 707 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 KIF18AQ8NI77 898 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 STX8Q9UNK0 236 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 CEP131Q9UPN4 1083 aa18.27■□□□□ 0.52
SQSTM1-213ENST00000510187 SCN4AP35499 1836 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 PTPREP23469 700 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 NBPF12Q5TAG4 269 aaPredicted RBP18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 PRAMEF18Q5VWM3 479 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 RCSD1Q6JBY9 416 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 PNMA8AQ86V59 439 aaPredicted RBP18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 SULF1Q8IWU6 871 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 ZC3H15Q8WU90 426 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 CEP95Q96GE4 821 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 HSD3B7Q9H2F3 369 aa18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 CGNQ9P2M7 1197 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-213ENST00000510187 WDR90Q96KV7 1748 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms