RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 LHFPL2Q6ZUX7 228 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 FAM214BQ7L5A3 538 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 GTF2IRD2Q86UP8 949 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 LRRTM3Q86VH5 581 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 CHAC2Q8WUX2 184 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 C1orf159Q96HA4 380 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 FBXL18Q96ME1 805 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 MCMBPQ9BTE3 642 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 MRPL4Q9BYD3 311 aaKnown RBP5.63□□□□□ -1.51
USP53-204ENST00000507906 MTFR1LQ9H019 292 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 GBP3Q9H0R5 595 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 TMX1Q9H3N1 280 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 CAAP1Q9H8G2 361 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 METTL14Q9HCE5 456 aaKnown RBP5.63□□□□□ -1.51
USP53-204ENST00000507906 PRDM10Q9NQV6 1147 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 GFOD1Q9NXC2 390 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 ASXL2Q76L83 1435 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 EYA4O95677 639 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 NAT2P11245 290 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 IREB2P48200 963 aaKnown RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 SUMO1P63165 101 aaKnown RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 FAM50AQ14320 339 aaKnown RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 ZNF460Q14592 562 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 BRDTQ58F21 947 aaPredicted RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 TRIM61Q5EBN2 209 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 BRAPQ7Z569 592 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 SHISA5Q8N114 240 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 ARMC10Q8N2F6 343 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 AFAP1L2Q8N4X5 818 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 FIBCD1Q8N539 461 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 TMEM145Q8NBT3 493 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 GSTCDQ8NEC7 633 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 RNF141Q8WVD5 230 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 WFDC12Q8WWY7 111 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 DDX1Q92499 740 aaKnown RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 EZH1Q92800 747 aaPredicted RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 LENG1Q96BZ8 264 aaPredicted RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 Q96M66 194 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 NOL6Q9H6R4 1146 aaKnown RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 FBXL21Q9UKT6 434 aa5.62□□□□□ -1.51
USP53-204ENST00000507906 TNPO3Q9Y5L0 923 aaKnown RBP5.62□□□□□ -1.51
USP53-204ENST00000507906 NOP56O00567 594 aaKnown RBP5.61□□□□□ -1.51
USP53-204ENST00000507906 ITGA4P13612 1032 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 GLB1P16278 677 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 CHRNA4P43681 627 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 GFRA1P56159 465 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 NFKB2Q00653 900 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 SEPT7Q16181 437 aaKnown RBP5.61□□□□□ -1.51
USP53-204ENST00000507906 FERMT3Q86UX7 667 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 TOP6BLQ8N6T0 577 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 KREMEN2Q8NCW0 462 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 SYTL5Q8TDW5 730 aaPredicted RBP5.61□□□□□ -1.51
USP53-204ENST00000507906 CHPF2Q9P2E5 772 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 NDOR1Q9UHB4 597 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 USP21Q9UK80 565 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 TRAF6Q9Y4K3 522 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 FHOD1Q9Y613 1164 aa5.61□□□□□ -1.51
USP53-204ENST00000507906 DNAJC25-GNG10A0A024R161 153 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 A0A087WZG4 1122 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 SHISA3A0PJX4 238 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 PRR33A8MZF0 331 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 C1QTNF9BB2RNN3 333 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 RASGRP1O95267 797 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 CTSKP43235 329 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 RNF4P78317 190 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 TAF7LQ5H9L4 462 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 NOL9Q5SY16 702 aaKnown RBP5.6□□□□□ -1.51
USP53-204ENST00000507906 SLC35F1Q5T1Q4 408 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.6□□□□□ -1.51
USP53-204ENST00000507906 MEGF10Q96KG7 1140 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 HEXIM2Q96MH2 286 aaKnown RBP5.6□□□□□ -1.51
USP53-204ENST00000507906 ZDHHC15Q96MV8 337 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 DUSP23Q9BVJ7 150 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 ASPNQ9BXN1 380 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 NKX2-4Q9H2Z4 354 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 HOMER2Q9NSB8 354 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 MAPRE3Q9UPY8 281 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 DIS3Q9Y2L1 958 aaKnown RBP5.6□□□□□ -1.51
USP53-204ENST00000507906 GPR55Q9Y2T6 319 aaPredicted RBP5.6□□□□□ -1.51
USP53-204ENST00000507906 PCDHB12Q9Y5F1 795 aa5.6□□□□□ -1.51
USP53-204ENST00000507906 WASHC2CQ9Y4E1 1318 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 H0Y8X5 98 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 MEIS1O00470 390 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 SART1O43290 800 aaKnown RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 BMP3P12645 472 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 KCNA6P17658 529 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 MAP4P27816 1152 aaKnown RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 DPY19L1Q2PZI1 675 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 PRRT3Q5FWE3 981 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 PKN3Q6P5Z2 889 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 ABHD17CQ6PCB6 329 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 KCNT2Q6UVM3 1135 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 NOL8Q76FK4 1167 aaKnown RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 CD163Q86VB7 1156 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 DZIP1LQ8IYY4 767 aaKnown RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 LEO1Q8WVC0 666 aaPredicted RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 GATA6Q92908 595 aa5.59□□□□□ -1.51
USP53-204ENST00000507906 IPO9Q96P70 1041 aaKnown RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 TYW1Q9NV66 732 aaKnown RBP5.59□□□□□ -1.51
USP53-204ENST00000507906 INTS7Q9NVH2 962 aaKnown RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms