RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SF3B6Q9Y3B4 125 aaKnown RBP5.96□□□□□ -1.46
HMGB1P28-201ENST00000507778 PTCH2Q9Y6C5 1203 aa5.96□□□□□ -1.46
HMGB1P28-201ENST00000507778 TRAV20A0A0B4J274 112 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 SHISA3A0PJX4 238 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 CYP26A1O43174 497 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 CDC45O75419 566 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 CEACAM5P06731 702 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 SRFP11831 508 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 CDKAL1Q5VV42 579 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 EGFLAMQ63HQ2 1017 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 ZDHHC13Q8IUH4 622 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 TRIM59Q8IWR1 403 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 DAGLBQ8NCG7 672 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 MRGPRX3Q96LB0 322 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 IPO9Q96P70 1041 aaKnown RBP5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 AARSD1Q9BTE6 412 aaKnown RBP5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 DUSP15Q9H1R2 295 aaPredicted RBP5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 PIM2Q9P1W9 311 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 ST14Q9Y5Y6 855 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 U3KQE9 123 aa5.95□□□□□ -1.46
HMGB1P28-201ENST00000507778 MEIS1O00470 390 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 DYRK3O43781 588 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 KCNH1O95259 989 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 GSNP06396 782 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 TMEM67Q5HYA8 995 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 CWF19L1Q69YN2 538 aaKnown RBP5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 SPACA3Q8IXA5 215 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 ZNF655Q8N720 491 aaPredicted RBP5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 ZDHHC15Q96MV8 337 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 CDC6Q99741 560 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 HDAC8Q9BY41 377 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 ARHGEF4Q9NR80 690 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 MINPP1Q9UNW1 487 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 PLAGL2Q9UPG8 496 aa5.94□□□□□ -1.46
HMGB1P28-201ENST00000507778 TMEM265A0A087WTH1 108 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 CCDC163A0A0D9SF12 145 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 LOC100996750A0A140TA64 210 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 PRR19A6NJB7 356 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 TBX1O43435 398 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 CAPNS1P04632 268 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 FOSL1P15407 271 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 CLCN7P51798 805 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 POU4F1Q01851 419 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 GRB10Q13322 594 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 IFI16Q16666 785 aaKnown RBP5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 PLEKHG4Q58EX7 1191 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 C16orf86Q6ZW13 317 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 SCUBE1Q8IWY4 988 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 NETO1Q8TDF5 533 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 BTN2A2Q8WVV5 523 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 CCDC140Q96MF4 163 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 HSPA12BQ96MM6 686 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 DHRS4Q9BTZ2 278 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 KRTAP4-6Q9BYQ5 205 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 ZSWIM5Q9P217 1185 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 SNX11Q9Y5W9 270 aa5.93□□□□□ -1.46
HMGB1P28-201ENST00000507778 H0Y8X5 98 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 H3BS24 57 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 PRODHO43272 600 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 ADAM23O75077 832 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 VAMP4O75379 141 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 FGFR1P11362 822 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 PABPC1P11940 636 aaKnown RBP5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 HOXC12P31275 282 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 L1CAMP32004 1257 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 GRIA2P42262 883 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 CTSKP43235 329 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 AMPD2Q01433 879 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 YOD1Q5VVQ6 348 aaPredicted RBP5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 FOXB2Q5VYV0 432 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 GTF2IRD2BQ6EKJ0 949 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 NSMFQ6X4W1 530 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 THAP5Q7Z6K1 395 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 GTF2IRD2Q86UP8 949 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 TSPYL5Q86VY4 417 aaPredicted RBP5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 PLD6Q8N2A8 252 aaKnown RBP5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 UBE2FQ969M7 185 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 TCTN2Q96GX1 697 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 ZC3H7BQ9UGR2 993 aaKnown RBP5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 SBNO2Q9Y2G9 1366 aa5.92□□□□□ -1.46
HMGB1P28-201ENST00000507778 TRBV23-1A0A0A0MS06 115 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 SSU72P8A0A1W2PR75 194 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 WASH4PA8MWX3 477 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 ASMTLO95671 621 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 TPP2P29144 1249 aaPredicted RBP5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 BMP8BP34820 402 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 NOP2P46087 812 aaKnown RBP5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 TCEA2Q15560 299 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 DPY19L1Q2PZI1 675 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 FAM209AQ5JX71 171 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 CRTC3Q6UUV7 619 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 ZNF662Q6ZS27 426 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 SYNPOQ8N3V7 929 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 EXOC2Q96KP1 924 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 IER2Q9BTL4 223 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 SLKQ9H2G2 1235 aaPredicted RBP5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 NKX2-4Q9H2Z4 354 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 SEMA6BQ9H3T3 888 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 CYP26B1Q9NR63 512 aa5.91□□□□□ -1.46
HMGB1P28-201ENST00000507778 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms