RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 SPZ1Q9BXG8 430 aa16.48■□□□□ 0.23
RNF4-208ENST00000507247 TANGO6Q9C0B7 1094 aa16.48■□□□□ 0.23
RNF4-208ENST00000507247 RIOX1Q9H6W3 641 aa16.48■□□□□ 0.23
RNF4-208ENST00000507247 CCL15-CCL14A0A0B4J2E2 113 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 RASSF10A6NK89 507 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 PLA2G6O60733 806 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 CETPP11597 493 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 FDPSP14324 419 aaKnown RBP16.47■□□□□ 0.23
RNF4-208ENST00000507247 CCL15Q16663 113 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 SYDE2Q5VT97 1194 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 CATSPERGQ6ZRH7 1159 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 FASTKD5Q7L8L6 764 aaKnown RBP16.47■□□□□ 0.23
RNF4-208ENST00000507247 ADGRF4Q8IZF3 695 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 INTS4Q96HW7 963 aaKnown RBP16.47■□□□□ 0.23
RNF4-208ENST00000507247 FEM1BQ9UK73 627 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 AGTPBP1Q9UPW5 1226 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 A0A0G2JMZ2 1700 aa16.47■□□□□ 0.23
RNF4-208ENST00000507247 hCG_1642624A0A1W2PR95 340 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L15C9J2P7 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L13C9JLJ4 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L11C9JVI0 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L18D6R9N7 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L22D6RA61 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L17D6RBQ6 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L19D6RCP7 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L20D6RJB6 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 CDKL5O76039 1030 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 FMNL1O95466 1100 aaPredicted RBP16.46■□□□□ 0.23
RNF4-208ENST00000507247 SMARCA1P28370 1054 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 USP17L24Q0WX57 530 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 IKQ13123 557 aaPredicted RBP16.46■□□□□ 0.23
RNF4-208ENST00000507247 DEFB115Q30KQ5 88 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 CPLX2Q6PUV4 134 aaKnown RBP16.46■□□□□ 0.23
RNF4-208ENST00000507247 PAXIP1Q6ZW49 1069 aaPredicted RBP16.46■□□□□ 0.23
RNF4-208ENST00000507247 FAM160B2Q86V87 743 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 CHURC1Q8WUH1 139 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 PIBF1Q8WXW3 757 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 CCDC102AQ96A19 550 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 MTMR8Q96EF0 704 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 DDX11Q96FC9 970 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 ZIC5Q96T25 663 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 SLC26A6Q9BXS9 759 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 RNF26Q9BY78 433 aaPredicted RBP16.46■□□□□ 0.23
RNF4-208ENST00000507247 JMJD4Q9H9V9 463 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 VAT1LQ9HCJ6 419 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 PRR12Q9ULL5 1215 aa16.46■□□□□ 0.23
RNF4-208ENST00000507247 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.46■□□□□ 0.23
RNF4-208ENST00000507247 STK36Q9NRP7 1315 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 SMCHD1A6NHR9 2005 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 TESPA1A2RU30 521 aaPredicted RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 BTBD19C9JJ37 291 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 PRPF3O43395 683 aaKnown RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 FLOT1O75955 427 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 HSP90AA1P07900 732 aaKnown RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 HOXA7P31268 230 aaPredicted RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 VEGFBP49765 207 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 SNAP25P60880 206 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 SSRP1Q08945 709 aaKnown RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 KIFC2Q96AC6 838 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 IPO9Q96P70 1041 aaKnown RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 PIGSQ96S52 555 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 PTPN18Q99952 460 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 SLF1Q9BQI6 1058 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 ORC3Q9UBD5 711 aaPredicted RBP16.45■□□□□ 0.22
RNF4-208ENST00000507247 PPP1R9AQ9ULJ8 1098 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 SMC3Q9UQE7 1217 aa16.45■□□□□ 0.22
RNF4-208ENST00000507247 MANSC4A6NHS7 340 aaPredicted RBP16.44■□□□□ 0.22
RNF4-208ENST00000507247 GJB2P29033 226 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 DSG3P32926 999 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 GRM1Q13255 1194 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 PKN1Q16512 942 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 HOMER1Q86YM7 354 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 FAM43AQ8N2R8 423 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 ATG4CQ96DT6 458 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 CAPNS2Q96L46 248 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 AIFM3Q96NN9 605 aa16.44■□□□□ 0.22
RNF4-208ENST00000507247 V9GY48 417 aaPredicted RBP16.44■□□□□ 0.22
RNF4-208ENST00000507247 SPDYE16A6NNV3 312 aaPredicted RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 HMGN5P82970 282 aaKnown RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 COG2Q14746 738 aa16.43■□□□□ 0.22
RNF4-208ENST00000507247 CDC37Q16543 378 aaPredicted RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 POTEEQ6S8J3 1075 aa16.43■□□□□ 0.22
RNF4-208ENST00000507247 ANKRD23Q86SG2 305 aa16.43■□□□□ 0.22
RNF4-208ENST00000507247 TRIM22Q8IYM9 498 aa16.43■□□□□ 0.22
RNF4-208ENST00000507247 PRPF38AQ8NAV1 312 aaKnown RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 RRP36Q96EU6 259 aaKnown RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 ASCC2Q9H1I8 757 aaPredicted RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 RANBP17Q9H2T7 1088 aaKnown RBP16.43■□□□□ 0.22
RNF4-208ENST00000507247 THSD7BQ9C0I4 1608 aa16.42■□□□□ 0.22
RNF4-208ENST00000507247 PDHXO00330 501 aa16.42■□□□□ 0.22
RNF4-208ENST00000507247 IGF2BP3O00425 579 aaKnown RBP eCLIP16.42■□□□□ 0.22
RNF4-208ENST00000507247 PPP1R11O60927 126 aaPredicted RBP16.42■□□□□ 0.22
RNF4-208ENST00000507247 AOC2O75106 756 aa16.42■□□□□ 0.22
RNF4-208ENST00000507247 DEXIO95424 95 aa16.42■□□□□ 0.22
RNF4-208ENST00000507247 IRX3P78415 501 aaPredicted RBP16.42■□□□□ 0.22
RNF4-208ENST00000507247 QRICH1Q2TAL8 776 aa16.42■□□□□ 0.22
RNF4-208ENST00000507247 P2RX7Q99572 595 aaKnown RBP16.42■□□□□ 0.22
RNF4-208ENST00000507247 ADAMTS5Q9UNA0 930 aa16.42■□□□□ 0.22
RNF4-208ENST00000507247 SLC45A1Q9Y2W3 748 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms