RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 WNK4Q96J92 1243 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 MS4A4AQ96JQ5 239 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 FEZ1Q99689 392 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 RBM27Q9P2N5 1060 aaKnown RBP8.36□□□□□ -1.07
NUP54-204ENST00000506098 FEM1BQ9UK73 627 aa8.36□□□□□ -1.07
NUP54-204ENST00000506098 FRMPD2Q68DX3 1309 aaPredicted RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 PTPDC1A2A3K4 754 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 TESPA1A2RU30 521 aaPredicted RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 JAK2O60674 1132 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 DEXIO95424 95 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 HSP90AA1P07900 732 aaKnown RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 VCAM1P19320 739 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 GJB2P29033 226 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 STAT2P52630 851 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 HMGCS2P54868 508 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 SNAPC2Q13487 334 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 ZYXQ15942 572 aaKnown RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 PKN1Q16512 942 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 CCDC96Q2M329 555 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 FAM83BQ5T0W9 1011 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 SPRYD7Q5W111 196 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 TTBK2Q6IQ55 1244 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 RGMBQ6NW40 437 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 CATSPERGQ6ZRH7 1159 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 FASTKD5Q7L8L6 764 aaKnown RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 TRIM22Q8IYM9 498 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 ADGRF4Q8IZF3 695 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 SPICE1Q8N0Z3 855 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 FAM177A1Q8N128 213 aaPredicted RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 CMTR1Q8N1G2 835 aaKnown RBP8.35□□□□□ -1.07
NUP54-204ENST00000506098 PHKBQ93100 1093 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 UBA5Q9GZZ9 404 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 JMJD4Q9H9V9 463 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 GPCPD1Q9NPB8 672 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 TMOD4Q9NZQ9 345 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 ADAMTS5Q9UNA0 930 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 SMC3Q9UQE7 1217 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 MTMR7Q9Y216 660 aa8.35□□□□□ -1.07
NUP54-204ENST00000506098 DOCK5Q9H7D0 1870 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 MYPNQ86TC9 1320 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L15C9J2P7 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L13C9JLJ4 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 TMEM232C9JQI7 657 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L11C9JVI0 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L18D6R9N7 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L22D6RA61 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L17D6RBQ6 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L19D6RCP7 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L20D6RJB6 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 hCG_1984214I3L0E3 225 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 SLC10A3P09131 477 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 FDX1P10109 184 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 APLP1P51693 650 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 GTF2A2P52657 109 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 USP17L24Q0WX57 530 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 DGKZQ13574 1117 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 PFKFB3Q16875 520 aaPredicted RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 SYDE2Q5VT97 1194 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 RASAL3Q86YV0 1011 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 ZNF713Q8N859 430 aaPredicted RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 PRPF38AQ8NAV1 312 aaKnown RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 WASF1Q92558 559 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 NUP88Q99567 741 aaPredicted RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 SLC26A6Q9BXS9 759 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 RPAP3Q9H6T3 665 aaPredicted RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 ORC3Q9UBD5 711 aaPredicted RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 PRR12Q9ULL5 1215 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 AGTPBP1Q9UPW5 1226 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 SLC45A1Q9Y2W3 748 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 KIF3AQ9Y496 699 aa8.34□□□□□ -1.07
NUP54-204ENST00000506098 V9GY48 417 aaPredicted RBP8.34□□□□□ -1.07
NUP54-204ENST00000506098 MYH9P35579 1960 aaKnown RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 CASP8AP2Q9UKL3 1982 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 PNMA6FA0A0J9YX94 578 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 RASSF10A6NK89 507 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 FAM155AB1AL88 458 aaPredicted RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 ZBTB5O15062 677 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 RAD21O60216 631 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 CETPP11597 493 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 SCG2P13521 617 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 PDCP20941 246 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 DSG3P32926 999 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 SLC16A2P36021 539 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 ZNF157P51786 506 aaPredicted RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 AKAP17AQ02040 695 aaKnown RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 COG2Q14746 738 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 GPAT2Q6NUI2 795 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 LBX2Q6XYB7 198 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 GADL1Q6ZQY3 521 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 CCDC82Q8N4S0 544 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 SPRYD3Q8NCJ5 442 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 CCDC102AQ96A19 550 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 RRP36Q96EU6 259 aaKnown RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 PIGSQ96S52 555 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 SLF1Q9BQI6 1058 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 RANBP17Q9H2T7 1088 aaKnown RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 CPVLQ9H3G5 476 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 SH3GLB2Q9NR46 395 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 CREBZFQ9NS37 354 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 HOXC10Q9NYD6 342 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms