RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 TTC38Q5R3I4 469 aa17.26■□□□□ 0.35
SDF4-207ENST00000494748 RPGRIP1Q96KN7 1286 aa17.26■□□□□ 0.35
SDF4-207ENST00000494748 ITGB4P16144 1822 aa17.26■□□□□ 0.35
SDF4-207ENST00000494748 TNKSO95271 1327 aa17.26■□□□□ 0.35
SDF4-207ENST00000494748 IRX3P78415 501 aaPredicted RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 CCDC122Q5T0U0 273 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 SH3GL2Q99962 352 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 DUSP10Q9Y6W6 482 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 SNAP23O00161 211 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 BMP15O95972 392 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 GIGYF2Q6Y7W6 1299 aaKnown RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 ZCRB1Q8TBF4 217 aaKnown RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 MAPK8IP1Q9UQF2 711 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 SLC4A4Q9Y6R1 1079 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 A0A087WUV0 522 aaPredicted RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 RPN1P04843 607 aaKnown RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 PUM3Q15397 648 aaKnown RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 ADSSL1Q8N142 457 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 ENAHQ8N8S7 591 aaPredicted RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 HELBQ8NG08 1087 aaPredicted RBP17.25■□□□□ 0.35
SDF4-207ENST00000494748 LPIN2Q92539 896 aa17.25■□□□□ 0.35
SDF4-207ENST00000494748 C2orf54Q08AI8 447 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 ZNF572Q7Z3I7 529 aaPredicted RBP17.24■□□□□ 0.35
SDF4-207ENST00000494748 GNL3LQ9NVN8 582 aaKnown RBP17.24■□□□□ 0.35
SDF4-207ENST00000494748 SOS2Q07890 1332 aaPredicted RBP17.24■□□□□ 0.35
SDF4-207ENST00000494748 TDO2P48775 406 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 PPARAQ07869 468 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 ADGRA1Q86SQ6 560 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 MAP3K12Q12852 859 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 EZH2Q15910 746 aaKnown RBP17.24■□□□□ 0.35
SDF4-207ENST00000494748 C4orf32Q8N8J7 132 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 HDAC7Q8WUI4 952 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 SMARCC1Q92922 1105 aaPredicted RBP17.24■□□□□ 0.35
SDF4-207ENST00000494748 RRP36Q96EU6 259 aaKnown RBP17.24■□□□□ 0.35
SDF4-207ENST00000494748 AGPAT5Q9NUQ2 364 aa17.24■□□□□ 0.35
SDF4-207ENST00000494748 RTL9Q8NET4 1388 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 ERICH2A1L162 156 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 H7C1D1 291 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 ZNF263O14978 683 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 GPTP24298 496 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 EIF5P55010 431 aaKnown RBP17.23■□□□□ 0.35
SDF4-207ENST00000494748 CREG2Q8IUH2 290 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 TOMM22Q9NS69 142 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 ANAPC4Q9UJX5 808 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 LUC7L2Q9Y383 392 aaKnown RBP17.23■□□□□ 0.35
SDF4-207ENST00000494748 V9GY48 417 aaPredicted RBP17.23■□□□□ 0.35
SDF4-207ENST00000494748 CKAP4Q07065 602 aaKnown RBP17.23■□□□□ 0.35
SDF4-207ENST00000494748 NAALADL2Q58DX5 795 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 GEMIN8Q9NWZ8 242 aaKnown RBP17.23■□□□□ 0.35
SDF4-207ENST00000494748 COL4A1P02462 1669 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 CNTNAP5Q8WYK1 1306 aa17.23■□□□□ 0.35
SDF4-207ENST00000494748 ANO9A1A5B4 782 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 PPP2R5BQ15173 497 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 ZNF330Q9Y3S2 320 aaPredicted RBP17.22■□□□□ 0.35
SDF4-207ENST00000494748 LAMB1P07942 1786 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 KLRC4O43908 158 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 GNAT2P19087 354 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 CCT5P48643 541 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 KLK7P49862 253 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 TROAPQ12815 778 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 FAM76AQ8TAV0 307 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 IRS4O14654 1257 aaPredicted RBP17.22■□□□□ 0.35
SDF4-207ENST00000494748 KIF6Q6ZMV9 814 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 MMGT1Q8N4V1 131 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 FAM184BQ9ULE4 1060 aa17.22■□□□□ 0.35
SDF4-207ENST00000494748 SRGNP10124 158 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 VEGFAP15692 232 aaPredicted RBP17.21■□□□□ 0.35
SDF4-207ENST00000494748 KCNV1Q6PIU1 500 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 LRRC15Q8TF66 581 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 STRCP1A6NGW2 1772 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 GOLGA6CA6NDK9 693 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 GOLGA6DP0CG33 693 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 MMS22LQ6ZRQ5 1243 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 DNAJC10Q8IXB1 793 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 MIGA1Q8NAN2 632 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 UBAC1Q9BSL1 405 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 GOLGA6AQ9NYA3 693 aa17.21■□□□□ 0.35
SDF4-207ENST00000494748 GOLGA6BA6NDN3 693 aa17.21■□□□□ 0.34
SDF4-207ENST00000494748 NKRFO15226 690 aaKnown RBP eCLIP17.21■□□□□ 0.345e-6■■■□□ 17.4
SDF4-207ENST00000494748 EIF3HO15372 352 aaKnown RBP eCLIP17.21■□□□□ 0.34
SDF4-207ENST00000494748 EEF1GP26641 437 aaKnown RBP17.21■□□□□ 0.34
SDF4-207ENST00000494748 DRC1Q96MC2 740 aa17.21■□□□□ 0.34
SDF4-207ENST00000494748 NHEJ1Q9H9Q4 299 aaPredicted RBP17.21■□□□□ 0.34
SDF4-207ENST00000494748 DMGDHQ9UI17 866 aaKnown RBP17.21■□□□□ 0.34
SDF4-207ENST00000494748 PPFIA1Q13136 1202 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 SWT1Q5T5J6 900 aaKnown RBP17.2■□□□□ 0.34
SDF4-207ENST00000494748 TTI2Q6NXR4 508 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 ANKRD20A12PQ8NF67 263 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 HINFPQ9BQA5 517 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 CRACR2AQ9BSW2 395 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 THAP9Q9H5L6 903 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 FAM169AQ9Y6X4 670 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 MROH5Q6ZUA9 1318 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 XBP1P17861 261 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 KRT83P78385 493 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 TMTC3Q6ZXV5 915 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 TSEN2Q8NCE0 465 aaKnown RBP17.2■□□□□ 0.34
SDF4-207ENST00000494748 ZSCAN10Q96SZ4 725 aaPredicted RBP17.2■□□□□ 0.34
SDF4-207ENST00000494748 DUSP9Q99956 384 aaKnown RBP17.2■□□□□ 0.34
SDF4-207ENST00000494748 NACAP1Q9BZK3 213 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms