RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 A0A0D9SFI3 127 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 NPM3O75607 178 aaKnown RBP13.21□□□□□ -0.3
BRCA1-222ENST00000493919 SMC2O95347 1197 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 SLURP2P0DP57 97 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 SDSP20132 328 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 DEFB115Q30KQ5 88 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 CCDC178Q5BJE1 867 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 ZMYM1Q5SVZ6 1142 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 TTC19Q6DKK2 380 aaPredicted RBP13.21□□□□□ -0.3
BRCA1-222ENST00000493919 CYP4F22Q6NT55 531 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 CCDC129Q6ZRS4 1044 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 AMOTL1Q8IY63 956 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 C10orf67Q8IYJ2 551 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 PHC3Q8NDX5 983 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 FAM227BQ96M60 508 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 WRNIP1Q96S55 665 aa13.21□□□□□ -0.3
BRCA1-222ENST00000493919 BAZ2AQ9UIF9 1905 aaKnown RBP13.2□□□□□ -0.3
BRCA1-222ENST00000493919 SIPA1L1O43166 1804 aa13.2□□□□□ -0.3
BRCA1-222ENST00000493919 RASSF10A6NK89 507 aa13.2□□□□□ -0.3
BRCA1-222ENST00000493919 CTIFO43310 598 aaKnown RBP13.2□□□□□ -0.3
BRCA1-222ENST00000493919 HLA-DOAP06340 250 aa13.2□□□□□ -0.3
BRCA1-222ENST00000493919 ZNF157P51786 506 aaPredicted RBP13.2□□□□□ -0.3
BRCA1-222ENST00000493919 NMIQ13287 307 aaPredicted RBP13.2□□□□□ -0.3
BRCA1-222ENST00000493919 TBC1D25Q3MII6 688 aa13.2□□□□□ -0.3
BRCA1-222ENST00000493919 DCP1AQ9NPI6 582 aaPredicted RBP13.2□□□□□ -0.3
BRCA1-222ENST00000493919 MCM9Q9NXL9 1143 aa13.2□□□□□ -0.3
BRCA1-222ENST00000493919 FAM53CQ9NYF3 392 aa13.2□□□□□ -0.3
BRCA1-222ENST00000493919 USP2O75604 605 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 POLR3DP05423 398 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 VCAM1P19320 739 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 PRPHP41219 470 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 CRACR2BQ8N4Y2 399 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 BHMTQ93088 406 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 MIEF2Q96C03 454 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 ZNF341Q9BYN7 854 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 DHX36Q9H2U1 1008 aaKnown RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 SPATS2LQ9NUQ6 558 aaKnown RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 TMOD4Q9NZQ9 345 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 RDXP35241 583 aaKnown RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 NAIF1Q69YI7 327 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 RGMBQ6NW40 437 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 CWC27Q6UX04 472 aaKnown RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 OTUD6AQ7L8S5 288 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 CLMNQ96JQ2 1002 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 CAPNS2Q96L46 248 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 STRBPQ96SI9 672 aaKnown RBP13.19□□□□□ -0.3
BRCA1-222ENST00000493919 CSADQ9Y600 493 aa13.19□□□□□ -0.3
BRCA1-222ENST00000493919 MKRN3Q13064 507 aaKnown RBP13.18□□□□□ -0.3
BRCA1-222ENST00000493919 CCDC73Q6ZRK6 1079 aa13.18□□□□□ -0.3
BRCA1-222ENST00000493919 CATIPQ7Z7H3 387 aa13.18□□□□□ -0.3
BRCA1-222ENST00000493919 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.18□□□□□ -0.3
BRCA1-222ENST00000493919 KLRG1Q96E93 195 aa13.18□□□□□ -0.3
BRCA1-222ENST00000493919 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.18□□□□□ -0.3
BRCA1-222ENST00000493919 ATP8A2Q9NTI2 1148 aa13.18□□□□□ -0.3
BRCA1-222ENST00000493919 PI4KBQ9UBF8 816 aa13.18□□□□□ -0.3
BRCA1-222ENST00000493919 CTDP1Q9Y5B0 961 aaPredicted RBP13.18□□□□□ -0.3
BRCA1-222ENST00000493919 HIP1O00291 1037 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 TPPPO94811 219 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 VEGFBP49765 207 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 SESN3P58005 492 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 GRIK3Q13003 919 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 VGLL4Q14135 290 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 MAP3K11Q16584 847 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 CCDC186Q7Z3E2 898 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 MYLK4Q86YV6 388 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-222ENST00000493919 PPM1EQ8WY54 764 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ZKSCAN4Q969J2 545 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-222ENST00000493919 CCDC34Q96HJ3 373 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ELP3Q9H9T3 547 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 HELLSQ9NRZ9 838 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 SGSM2O43147 1006 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 CPP00450 1065 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 CYP2D6P10635 497 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 GNAT2P19087 354 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 INPP5BP32019 993 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 USP8P40818 1118 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ECE1P42892 770 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 EVX2Q03828 476 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 MCMDC2Q4G0Z9 681 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 SRLQ86TD4 932 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 TTC6Q86TZ1 520 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ZNF589Q86UQ0 364 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-222ENST00000493919 RASAL3Q86YV0 1011 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ELOA2Q8IYF1 753 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-222ENST00000493919 HHIPL1Q96JK4 782 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 PLEKHG4BQ96PX9 1271 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 EPB41L4AQ9HCS5 686 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-222ENST00000493919 TRPV5Q9NQA5 729 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ZNF446Q9NWS9 450 aa13.17□□□□□ -0.3
BRCA1-222ENST00000493919 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-222ENST00000493919 LAMB1P07942 1786 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 CCDC171Q6TFL3 1326 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 WDR33Q9C0J8 1336 aaKnown RBP13.16□□□□□ -0.3
BRCA1-222ENST00000493919 CYP2D7A0A087X1C5 515 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 KCNA2P16389 499 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 BDNFP23560 247 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 PLCD1P51178 756 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 MAP3K9P80192 1104 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 LDLRAD1Q5T700 205 aa13.16□□□□□ -0.3
BRCA1-222ENST00000493919 VPS53Q5VIR6 699 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms