RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 ATP11BQ9Y2G3 1177 aa10.9□□□□□ -0.66
HDAC3-212ENST00000492407 TACC3Q9Y6A5 838 aa10.9□□□□□ -0.66
HDAC3-212ENST00000492407 DNAJC25-GNG10A0A024R161 153 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 MOXD2PA6NHM9 499 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 SMIM22K7EJ46 135 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 SMARCA5O60264 1052 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-212ENST00000492407 NDUFB10O96000 172 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 SLC3A2P08195 630 aaKnown RBP10.89□□□□□ -0.67
HDAC3-212ENST00000492407 ZNF865P0CJ78 1059 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-212ENST00000492407 PLCB2Q00722 1185 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 PDE4BQ07343 736 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 PRAMEF19Q5SWL8 479 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 C20orf194Q5TEA3 1177 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 CHST13Q8NET6 341 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 DDX11Q96FC9 970 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 FBXO28Q9NVF7 368 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 MTMR4Q9NYA4 1195 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 CLIP2Q9UDT6 1046 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 FAM184BQ9ULE4 1060 aa10.89□□□□□ -0.67
HDAC3-212ENST00000492407 MINDY4BA8MYZ0 360 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 DLL1O00548 723 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 KIAA0355O15063 1070 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 GPAA1O43292 621 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 PLA2G6O60733 806 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 TTLL1O95922 423 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 CHGBP05060 677 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 PGK2P07205 417 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 TDO2P48775 406 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 SMAD3P84022 425 aaKnown RBP10.88□□□□□ -0.67
HDAC3-212ENST00000492407 TRIM60Q495X7 471 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 FAM47AQ5JRC9 791 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 SNRNP48Q6IEG0 339 aaKnown RBP10.88□□□□□ -0.67
HDAC3-212ENST00000492407 ANKRD33Q7Z3H0 272 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 IFNL3Q8IZI9 196 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 NEDD1Q8NHV4 660 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 NUP133Q8WUM0 1156 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 SLC38A10Q9HBR0 1119 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 PDLIM7Q9NR12 457 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 CTDP1Q9Y5B0 961 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-212ENST00000492407 PLIN4Q96Q06 1357 aa10.88□□□□□ -0.67
HDAC3-212ENST00000492407 TMEM265A0A087WTH1 108 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 RAD21O60216 631 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 ADAMTS4O75173 837 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 DUSP11O75319 330 aaKnown RBP10.87□□□□□ -0.67
HDAC3-212ENST00000492407 APPP05067 770 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 CLTBP09497 229 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 CST5P28325 142 aaPredicted RBP10.87□□□□□ -0.67
HDAC3-212ENST00000492407 NKX3-2P78367 333 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 TLE2Q04725 743 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 SAMD1Q6SPF0 538 aaPredicted RBP10.87□□□□□ -0.67
HDAC3-212ENST00000492407 Q7L0L9 218 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 PCSK9Q8NBP7 692 aaKnown RBP10.87□□□□□ -0.67
HDAC3-212ENST00000492407 KLHDC9Q8NEP7 349 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 GMCL1Q96IK5 515 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 SEZ6LQ9BYH1 1024 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 ABHD16BQ9H3Z7 469 aa10.87□□□□□ -0.67
HDAC3-212ENST00000492407 ELP1O95163 1332 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 DNAH12Q6ZR08 3092 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 A0A1W2PQ45 241 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-212ENST00000492407 A0A1W2PQY0 241 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 TRIM43BA6NCK2 446 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 SNAI1O95863 264 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-212ENST00000492407 TSPY3P0CV98 308 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 TSPY8P0CW00 308 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 BMP3P12645 472 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 ACLYP53396 1101 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 SHHQ15465 462 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 TKFCQ3LXA3 575 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 ZNF697Q5TEC3 545 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 ANO1Q5XXA6 986 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 CCSAPQ6IQ19 270 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-212ENST00000492407 FAM160B2Q86V87 743 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 CHURC1Q8WUH1 139 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 BADQ92934 168 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 TRIM43Q96BQ3 446 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-212ENST00000492407 CEP95Q96GE4 821 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 SPC25Q9HBM1 224 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 EPB41L4AQ9HCS5 686 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-212ENST00000492407 PRDM5Q9NQX1 630 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-212ENST00000492407 RIPK3Q9Y572 518 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 FRMPD3Q5JV73 1810 aa10.86□□□□□ -0.67
HDAC3-212ENST00000492407 MROH7Q68CQ1 1323 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 COL6A3P12111 3177 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 DCDC2CA8MYV0 355 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 PGK1P00558 417 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 MYCNP04198 464 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-212ENST00000492407 TAL1P17542 331 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-212ENST00000492407 ACVR2BQ13705 512 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 ZMYM1Q5SVZ6 1142 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 SLFN13Q68D06 897 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 ANKRD35Q8N283 1001 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 PI4K2BQ8TCG2 481 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 STAG1Q8WVM7 1258 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 FERMT2Q96AC1 680 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 KIFC2Q96AC6 838 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 NUP88Q99567 741 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-212ENST00000492407 NAPBQ9H115 298 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 UPF3AQ9H1J1 476 aaKnown RBP10.85□□□□□ -0.67
HDAC3-212ENST00000492407 STARD7Q9NQZ5 370 aa10.85□□□□□ -0.67
HDAC3-212ENST00000492407 GREB1LQ9C091 1923 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms