RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 GABPAQ06546 454 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 SREBF2Q12772 1141 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 SLC4A8Q2Y0W8 1093 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 PRPF38BQ5VTL8 546 aaKnown RBP11.79□□□□□ -0.52
HDAC3-210ENST00000490808 GALNT17Q6IS24 598 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 RCSD1Q6JBY9 416 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 TATDN1Q6P1N9 297 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 POTEDQ86YR6 584 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 NOSTRINQ8IVI9 506 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 SCYL3Q8IZE3 742 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 CCDC82Q8N4S0 544 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 CCDC148Q8NFR7 591 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 NKX2-3Q8TAU0 364 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 TMEM47Q9BQJ4 181 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.79□□□□□ -0.52
HDAC3-210ENST00000490808 PICK1Q9NRD5 415 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 TMEM63CQ9P1W3 806 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 V9GY48 417 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-210ENST00000490808 A0A1W2PQ27 194 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 A0A1W2PQ64 194 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 A0A1W2PQD8 194 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 MANSC4A6NHS7 340 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 SPDYE5A6NIY4 337 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 PHF20L1A8MW92 1017 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 UBE2Q2LH0YL09 131 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 hCG_1984214I3L0E3 225 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 SPTLC2O15270 562 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 NMT2O60551 498 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 DTNBO60941 627 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 PPFIA3O75145 1194 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 SCG2P13521 617 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 NASPP49321 788 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 PPIL2Q13356 520 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 ASPRV1Q53RT3 343 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 ANO1Q5XXA6 986 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 ADALQ6DHV7 355 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 OTUD7BQ6GQQ9 843 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 FAM173BQ6P4H8 233 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 ZFPM1Q8IX07 1006 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 DIS3L2Q8IYB7 885 aaKnown RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 ZNF713Q8N859 430 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 NUP62CLQ9H1M0 184 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 TSPY26PQ9H489 355 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 GRPEL1Q9HAV7 217 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 AS3MTQ9HBK9 375 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 ZCCHC17Q9NP64 241 aaKnown RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 CABP5Q9NP86 173 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 IL17RBQ9NRM6 502 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 SEC63Q9UGP8 760 aaKnown RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 SCAF8Q9UPN6 1271 aaKnown RBP11.78□□□□□ -0.52
HDAC3-210ENST00000490808 PTPRFP10586 1907 aa11.78□□□□□ -0.52
HDAC3-210ENST00000490808 CXCL11O14625 94 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 PPP6R2O75170 966 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 ALDH1A1P00352 501 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 CAP2P40123 477 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 NOVP48745 357 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 GTF2A2P52657 109 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 NLRP5P59047 1200 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 CEBPZQ03701 1054 aaKnown RBP11.77□□□□□ -0.53
HDAC3-210ENST00000490808 VGLL4Q14135 290 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 SLC39A14Q15043 492 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 PFKFB3Q16875 520 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-210ENST00000490808 CERKLQ49MI3 558 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-210ENST00000490808 GPATCH4Q5T3I0 446 aaKnown RBP11.77□□□□□ -0.53
HDAC3-210ENST00000490808 SPRYD7Q5W111 196 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 MIGA2Q7L4E1 593 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 RASAL3Q86YV0 1011 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 LINC00301Q8NCQ3 95 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 RRP36Q96EU6 259 aaKnown RBP11.77□□□□□ -0.53
HDAC3-210ENST00000490808 CCDC34Q96HJ3 373 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 CHAMP1Q96JM3 812 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 USP28Q96RU2 1077 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 PHF20Q9BVI0 1012 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 SPZ1Q9BXG8 430 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 KANSL2Q9H9L4 492 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 MTMR4Q9NYA4 1195 aa11.77□□□□□ -0.53
HDAC3-210ENST00000490808 PDE4DIPQ5VU43 2346 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 SYCE3A1L190 88 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 KLRF2D3W0D1 207 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 SMIM22K7EJ46 135 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 MPHOSPH10O00566 681 aaKnown RBP11.76□□□□□ -0.53
HDAC3-210ENST00000490808 PLEKHA8P1O95397 391 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 CCDC192P0DO97 292 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 PRKG1Q13976 671 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 DLK2Q6UY11 383 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 CDAN1Q8IWY9 1227 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 CCAR1Q8IX12 1150 aaKnown RBP11.76□□□□□ -0.53
HDAC3-210ENST00000490808 SRBD1Q8N5C6 995 aaKnown RBP11.76□□□□□ -0.53
HDAC3-210ENST00000490808 SLC44A5Q8NCS7 719 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 CEP95Q96GE4 821 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 WNK4Q96J92 1243 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 AIFM3Q96NN9 605 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 TNMDQ9H2S6 317 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 SYNPO2Q9UMS6 1093 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 KCNH4Q9UQ05 1017 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 CNTNAP5Q8WYK1 1306 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 PHIPQ8WWQ0 1821 aa11.76□□□□□ -0.53
HDAC3-210ENST00000490808 PALM3A6NDB9 673 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-210ENST00000490808 USP17L5A8MUK1 530 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms