RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 KIAA1755Q5JYT7 1200 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 DLK2Q6UY11 383 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 NOSTRINQ8IVI9 506 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.93■■□□□ 1.58
SMC4-221ENST00000489573 ZKSCAN4Q969J2 545 aaPredicted RBP24.93■■□□□ 1.58
SMC4-221ENST00000489573 MTMR8Q96EF0 704 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 USP2O75604 605 aaPredicted RBP24.92■■□□□ 1.58
SMC4-221ENST00000489573 CCDC12Q8WUD4 166 aaPredicted RBP24.92■■□□□ 1.58
SMC4-221ENST00000489573 CDCA5Q96FF9 252 aa24.92■■□□□ 1.58
SMC4-221ENST00000489573 AS3MTQ9HBK9 375 aa24.92■■□□□ 1.58
SMC4-221ENST00000489573 TCHHQ07283 1943 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 PNMA6FA0A0J9YX94 578 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 USP17L10C9JJH3 530 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 TMEM232C9JQI7 657 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 PTPRAP18433 802 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 PRKG1Q13976 671 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 NPY5RQ15761 445 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 BTNL9Q6UXG8 535 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 OXER1Q8TDS5 423 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 WDR18Q9BV38 432 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 KIAA1683Q9H0B3 1180 aa24.91■■□□□ 1.58
SMC4-221ENST00000489573 ZBTB5O15062 677 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 PPP1R12BO60237 982 aaPredicted RBP24.9■■□□□ 1.58
SMC4-221ENST00000489573 NF2P35240 595 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 IKQ13123 557 aaPredicted RBP24.9■■□□□ 1.58
SMC4-221ENST00000489573 NR5A1Q13285 461 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 FAM83BQ5T0W9 1011 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 SYDE2Q5VT97 1194 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 TYW1BQ6NUM6 668 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 USP28Q96RU2 1077 aa24.9■■□□□ 1.58
SMC4-221ENST00000489573 TRAK2O60296 914 aa24.89■■□□□ 1.58
SMC4-221ENST00000489573 NAPAP54920 295 aa24.89■■□□□ 1.58
SMC4-221ENST00000489573 SKOR2Q2VWA4 1001 aaPredicted RBP24.89■■□□□ 1.58
SMC4-221ENST00000489573 GALNT17Q6IS24 598 aa24.89■■□□□ 1.58
SMC4-221ENST00000489573 LPAR1Q92633 364 aa24.89■■□□□ 1.58
SMC4-221ENST00000489573 SPATA32Q96LK8 384 aa24.89■■□□□ 1.58
SMC4-221ENST00000489573 ELP1O95163 1332 aa24.89■■□□□ 1.57
SMC4-221ENST00000489573 DAGLBQ8NCG7 672 aa24.88■■□□□ 1.57
SMC4-221ENST00000489573 LEO1Q8WVC0 666 aaPredicted RBP24.88■■□□□ 1.57
SMC4-221ENST00000489573 PCDHA4Q9UN74 947 aa24.88■■□□□ 1.57
SMC4-221ENST00000489573 IREB2P48200 963 aaKnown RBP24.88■■□□□ 1.57
SMC4-221ENST00000489573 STAT2P52630 851 aa24.88■■□□□ 1.57
SMC4-221ENST00000489573 MAP3K9P80192 1104 aa24.88■■□□□ 1.57
SMC4-221ENST00000489573 CDC37Q16543 378 aaPredicted RBP24.88■■□□□ 1.57
SMC4-221ENST00000489573 FTOQ9C0B1 505 aaKnown RBP eCLIP24.88■■□□□ 1.57
SMC4-221ENST00000489573 RTEL1Q9NZ71 1219 aa24.88■■□□□ 1.57
SMC4-221ENST00000489573 CLEC11AQ9Y240 323 aa24.88■■□□□ 1.57
SMC4-221ENST00000489573 PAPPA2Q9BXP8 1791 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 USP14P54578 494 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 CEBPZQ03701 1054 aaKnown RBP24.87■■□□□ 1.57
SMC4-221ENST00000489573 MTMR2Q13614 643 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 QRICH1Q2TAL8 776 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 PPP1R18Q6NYC8 613 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 BLIDQ8IZY5 108 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 ZNF280CQ8ND82 737 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 TNFRSF25Q93038 417 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 ANP32EQ9BTT0 268 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 ZMYND12Q9H0C1 365 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 POLR3EQ9NVU0 708 aa24.87■■□□□ 1.57
SMC4-221ENST00000489573 ESYT2A0FGR8 921 aa24.86■■□□□ 1.57
SMC4-221ENST00000489573 WDR46O15213 610 aaKnown RBP24.86■■□□□ 1.57
SMC4-221ENST00000489573 PLA2G6O60733 806 aa24.86■■□□□ 1.57
SMC4-221ENST00000489573 SPP2Q13103 211 aa24.86■■□□□ 1.57
SMC4-221ENST00000489573 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.86■■□□□ 1.57
SMC4-221ENST00000489573 FAM160B2Q86V87 743 aa24.86■■□□□ 1.57
SMC4-221ENST00000489573 CHURC1Q8WUH1 139 aa24.86■■□□□ 1.57
SMC4-221ENST00000489573 C6orf50Q9HD87 102 aa24.86■■□□□ 1.57
SMC4-221ENST00000489573 DDX49Q9Y6V7 483 aaKnown RBP24.86■■□□□ 1.57
SMC4-221ENST00000489573 PPP1R11O60927 126 aaPredicted RBP24.85■■□□□ 1.57
SMC4-221ENST00000489573 VGLL4Q14135 290 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 COA7Q96BR5 231 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 RRAGCQ9HB90 399 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 FEM1BQ9UK73 627 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 RCOR1Q9UKL0 485 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 PRR12Q9ULL5 1215 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 CSADQ9Y600 493 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 SNCAIPQ9Y6H5 919 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 ZHX2Q9Y6X8 837 aa24.85■■□□□ 1.57
SMC4-221ENST00000489573 POTEIP0CG38 1075 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 POTEJP0CG39 1038 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 GNA11P29992 359 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 NASPP49321 788 aaPredicted RBP24.84■■□□□ 1.57
SMC4-221ENST00000489573 BACE1P56817 501 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 UBE2HP62256 183 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 RILPL1Q5EBL4 403 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 ANO1Q5XXA6 986 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 CLIC4Q9Y696 253 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 SMCO2A6NFE2 343 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 GADD45BO75293 160 aaPredicted RBP24.84■■□□□ 1.57
SMC4-221ENST00000489573 YEATS4O95619 227 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 MBD3O95983 291 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 KLHL40Q2TBA0 621 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 EMILIN3Q9NT22 766 aa24.84■■□□□ 1.57
SMC4-221ENST00000489573 OTOFQ9HC10 1997 aa24.83■■□□□ 1.57
SMC4-221ENST00000489573 NOL7Q9UMY1 257 aaKnown RBP24.83■■□□□ 1.57
SMC4-221ENST00000489573 PHIPQ8WWQ0 1821 aa24.83■■□□□ 1.57
SMC4-221ENST00000489573 TRIM75PA6NK02 468 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 C19orf81C9J6K1 198 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 M0R2N6 131 aa24.82■■□□□ 1.56
SMC4-221ENST00000489573 ADAMTS3O15072 1205 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms