RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CALML3P27482 149 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 KRT2P35908 639 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 CSPP1Q1MSJ5 1256 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 CCDC84Q86UT8 332 aaPredicted RBP13.23□□□□□ -0.29
C9orf3-220ENST00000489318 CCDC12Q8WUD4 166 aaPredicted RBP13.23□□□□□ -0.29
C9orf3-220ENST00000489318 GPKOWQ92917 476 aaPredicted RBP eCLIP13.23□□□□□ -0.29
C9orf3-220ENST00000489318 ZKSCAN4Q969J2 545 aaPredicted RBP13.23□□□□□ -0.29
C9orf3-220ENST00000489318 ZNF396Q96N95 335 aaPredicted RBP13.23□□□□□ -0.29
C9orf3-220ENST00000489318 SCAND2PQ9GZW5 306 aaPredicted RBP13.23□□□□□ -0.29
C9orf3-220ENST00000489318 ZMYND12Q9H0C1 365 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 POLR3EQ9NVU0 708 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 CFAP45Q9UL16 551 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 SNCAIPQ9Y6H5 919 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 BTBD18B2RXH4 712 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 PPP1R12BO60237 982 aaPredicted RBP13.22□□□□□ -0.29
C9orf3-220ENST00000489318 NF2P35240 595 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 NASPP49321 788 aaPredicted RBP13.22□□□□□ -0.29
C9orf3-220ENST00000489318 STAT2P52630 851 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 USP14P54578 494 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 SYDE2Q5VT97 1194 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.22□□□□□ -0.29
C9orf3-220ENST00000489318 OXER1Q8TDS5 423 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 USP28Q96RU2 1077 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 NUP88Q99567 741 aaPredicted RBP13.22□□□□□ -0.29
C9orf3-220ENST00000489318 FEZ1Q99689 392 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 BRMS1Q9HCU9 246 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 PICK1Q9NRD5 415 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 PCDHA4Q9UN74 947 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 TRPM7Q96QT4 1865 aa13.22□□□□□ -0.29
C9orf3-220ENST00000489318 UNCXA6NJT0 531 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 USP17L10C9JJH3 530 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 TMEM232C9JQI7 657 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 FIBPO43427 364 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 PPP1R11O60927 126 aaPredicted RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 YEATS4O95619 227 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 SLC16A2P36021 539 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 IREB2P48200 963 aaKnown RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 BACE1P56817 501 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 MAP3K9P80192 1104 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 NR5A1Q13285 461 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 VGLL4Q14135 290 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 CDC37Q16543 378 aaPredicted RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 FOXD4L6Q3SYB3 417 aaPredicted RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 EAPPQ56P03 285 aaPredicted RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 RILPL1Q5EBL4 403 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 FAM83BQ5T0W9 1011 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 FOXD4L3Q6VB84 417 aaPredicted RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 HEATR3Q7Z4Q2 680 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 FAM160B2Q86V87 743 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 HOMER1Q86YM7 354 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 TEX2Q8IWB9 1127 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 SPICE1Q8N0Z3 855 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 ZNF280CQ8ND82 737 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 RTEL1Q9NZ71 1219 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 FZD1Q9UP38 647 aa13.21□□□□□ -0.29
C9orf3-220ENST00000489318 MORC2Q9Y6X9 1032 aaPredicted RBP13.21□□□□□ -0.29
C9orf3-220ENST00000489318 C19orf81C9J6K1 198 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 PRPF40AO75400 957 aaKnown RBP13.2□□□□□ -0.3
C9orf3-220ENST00000489318 POTEIP0CG38 1075 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 POTEJP0CG39 1038 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 NAPAP54920 295 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 NLRP5P59047 1200 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 MTMR2Q13614 643 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 GNL2Q13823 731 aaKnown RBP13.2□□□□□ -0.3
C9orf3-220ENST00000489318 NBR1Q14596 966 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 QRICH1Q2TAL8 776 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 SKOR2Q2VWA4 1001 aaPredicted RBP13.2□□□□□ -0.3
C9orf3-220ENST00000489318 SH3D19Q5HYK7 790 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 DLK2Q6UY11 383 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 LDHDQ86WU2 507 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 BLIDQ8IZY5 108 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 LEO1Q8WVC0 666 aaPredicted RBP13.2□□□□□ -0.3
C9orf3-220ENST00000489318 PIBF1Q8WXW3 757 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 RANBP17Q9H2T7 1088 aaKnown RBP13.2□□□□□ -0.3
C9orf3-220ENST00000489318 GDPD2Q9HCC8 539 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 EMILIN3Q9NT22 766 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 FEM1BQ9UK73 627 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 RCOR1Q9UKL0 485 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 PRR12Q9ULL5 1215 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 AFG3L2Q9Y4W6 797 aa13.2□□□□□ -0.3
C9orf3-220ENST00000489318 COL11A1P12107 1806 aaPredicted RBP13.2□□□□□ -0.3
C9orf3-220ENST00000489318 RAD21O60216 631 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 VCAM1P19320 739 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 NCLP19338 710 aaKnown RBP13.19□□□□□ -0.3
C9orf3-220ENST00000489318 GNA11P29992 359 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 TRAPPC10P48553 1259 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 KLHL40Q2TBA0 621 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 ANKRD13AQ8IZ07 590 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 CHURC1Q8WUH1 139 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 SPATA32Q96LK8 384 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 VAT1LQ9HCJ6 419 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 C6orf50Q9HD87 102 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 CSADQ9Y600 493 aa13.19□□□□□ -0.3
C9orf3-220ENST00000489318 DCAF8L1A6NGE4 600 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 SPDYE5A6NIY4 337 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 MBD3O95983 291 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 TOB1P50616 345 aaPredicted RBP13.18□□□□□ -0.3
C9orf3-220ENST00000489318 UBE2HP62256 183 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 SPP2Q13103 211 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 PTPAQ15257 358 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms