RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 UPF3BQ9BZI7 483 aaKnown RBP12.05□□□□□ -0.48
SKA1-204ENST00000488454 MTMR7Q9Y216 660 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 CEP350Q5VT06 3117 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 TESPA1A2RU30 521 aaPredicted RBP12.04□□□□□ -0.48
SKA1-204ENST00000488454 SH2B2O14492 632 aaPredicted RBP12.04□□□□□ -0.48
SKA1-204ENST00000488454 OSBPP22059 807 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 LIFRP42702 1097 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 SLC1A4P43007 532 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 TM4SF4P48230 202 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 NEK4P51957 841 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 ANKRD1Q15327 319 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 DMRTA1Q5VZB9 504 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 RCSD1Q6JBY9 416 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 Q6ZUG5 572 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 SPICE1Q8N0Z3 855 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 PNMA1Q8ND90 353 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 GMCL1P1Q8NEA9 526 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 BRI3BPQ8WY22 251 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 C12orf42Q96LP6 360 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 TCEANC2Q96MN5 208 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 EPAS1Q99814 870 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 NAP1L2Q9ULW6 460 aaPredicted RBP12.04□□□□□ -0.48
SKA1-204ENST00000488454 SLC12A7Q9Y666 1083 aa12.04□□□□□ -0.48
SKA1-204ENST00000488454 USP17L15C9J2P7 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L13C9JLJ4 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L11C9JVI0 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L18D6R9N7 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L22D6RA61 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L17D6RBQ6 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L19D6RCP7 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L20D6RJB6 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 WDR46O15213 610 aaKnown RBP12.03□□□□□ -0.48
SKA1-204ENST00000488454 NDUFB10O96000 172 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 ALDH1A1P00352 501 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 CALM1P0DP23 149 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 CALM2P0DP24 149 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 CALM3P0DP25 149 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 USP17L24Q0WX57 530 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 ANKRD23Q86SG2 305 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 IL27Q8NEV9 243 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 DCAF4Q8WV16 495 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 CHMP4CQ96CF2 233 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 IL17RAQ96F46 866 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 GMCL1Q96IK5 515 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 TANGO6Q9C0B7 1094 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 RPAP3Q9H6T3 665 aaPredicted RBP12.03□□□□□ -0.48
SKA1-204ENST00000488454 LY9Q9HBG7 655 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 PNMA3Q9UL41 463 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 AGTPBP1Q9UPW5 1226 aa12.03□□□□□ -0.48
SKA1-204ENST00000488454 LAMA4Q16363 1823 aa12.02□□□□□ -0.48
SKA1-204ENST00000488454 DOCK1Q14185 1865 aa12.02□□□□□ -0.48
SKA1-204ENST00000488454 BTBD19C9JJ37 291 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 PDHXO00330 501 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 BMP3P12645 472 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 VCAM1P19320 739 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 PTPREP23469 700 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 IRX3P78415 501 aaPredicted RBP12.02□□□□□ -0.49
SKA1-204ENST00000488454 MAP2K1Q02750 393 aaPredicted RBP12.02□□□□□ -0.49
SKA1-204ENST00000488454 IKQ13123 557 aaPredicted RBP12.02□□□□□ -0.49
SKA1-204ENST00000488454 DGKZQ13574 1117 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 RABEP1Q15276 862 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 CCDC96Q2M329 555 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 NUP133Q8WUM0 1156 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 BRF1Q92994 677 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 ZIC5Q96T25 663 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 BEGAINQ9BUH8 593 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 ZCCHC17Q9NP64 241 aaKnown RBP12.02□□□□□ -0.49
SKA1-204ENST00000488454 SLC45A1Q9Y2W3 748 aa12.02□□□□□ -0.49
SKA1-204ENST00000488454 DDAH1O94760 285 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 PARP1P09874 1014 aaKnown RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 HOXA7P31268 230 aaPredicted RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 MOGSQ13724 837 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 COL9A3Q14050 684 aaPredicted RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 FAM83BQ5T0W9 1011 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 TREML2Q5T2D2 321 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 GPATCH4Q5T3I0 446 aaKnown RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 GPAT2Q6NUI2 795 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 CATSPERGQ6ZRH7 1159 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 SGMS1Q86VZ5 419 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 ZNF654Q8IZM8 581 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 FAM43AQ8N2R8 423 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 FBXL16Q8N461 479 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 DNAJC5GQ8N7S2 189 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 CTCFLQ8NI51 663 aaPredicted RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 CHURC1Q8WUH1 139 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 PARK7Q99497 189 aaKnown RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 PTPN18Q99952 460 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 ALDH8A1Q9H2A2 487 aaPredicted RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 HOXC10Q9NYD6 342 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 FEM1BQ9UK73 627 aa12.01□□□□□ -0.49
SKA1-204ENST00000488454 CTDP1Q9Y5B0 961 aaPredicted RBP12.01□□□□□ -0.49
SKA1-204ENST00000488454 MYH8P13535 1937 aa12□□□□□ -0.49
SKA1-204ENST00000488454 OTOFQ9HC10 1997 aa12□□□□□ -0.49
SKA1-204ENST00000488454 KLF18A0A0U1RQI7 1052 aa12□□□□□ -0.49
SKA1-204ENST00000488454 ZBTB43O43298 467 aa12□□□□□ -0.49
SKA1-204ENST00000488454 FLOT1O75955 427 aa12□□□□□ -0.49
SKA1-204ENST00000488454 PDHBP11177 359 aa12□□□□□ -0.49
SKA1-204ENST00000488454 KIF5BP33176 963 aa12□□□□□ -0.49
SKA1-204ENST00000488454 GNAQP50148 359 aa12□□□□□ -0.49
SKA1-204ENST00000488454 APOBRQ0VD83 1088 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms