RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 APEX2Q9UBZ4 518 aa4.49□□□□□ -1.69
GPNMB-212ENST00000487890 GDF2Q9UK05 429 aaPredicted RBP4.49□□□□□ -1.69
GPNMB-212ENST00000487890 NSFL1CQ9UNZ2 370 aaKnown RBP4.49□□□□□ -1.69
GPNMB-212ENST00000487890 DHX29Q7Z478 1369 aaKnown RBP4.49□□□□□ -1.69
GPNMB-212ENST00000487890 PTPN23Q9H3S7 1636 aa4.49□□□□□ -1.69
GPNMB-212ENST00000487890 POLR1AO95602 1720 aaPredicted RBP4.49□□□□□ -1.69
GPNMB-212ENST00000487890 RTEL1-TNFRSF6BF6WH68 1400 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 NPATQ14207 1427 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 NCOA1Q15788 1441 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 KDM5DQ9BY66 1539 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 FAM83GA6ND36 823 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 C11orf95C9JLR9 678 aaPredicted RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 FANCGO15287 622 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 TMPRSS2O15393 492 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 PRODHO43272 600 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 TBX1O43435 398 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 CBFA2T2O43439 604 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 PABPC1P11940 636 aaKnown RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 GBP1P32455 592 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 ID3Q02535 119 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 CT47A1Q5JQC4 288 aaPredicted RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 DCAF15Q66K64 600 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 HEATR6Q6AI08 1181 aaKnown RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 SLCO4C1Q6ZQN7 724 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 LRRTM3Q86VH5 581 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 HID1Q8IV36 788 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 AFAP1L2Q8N4X5 818 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 ZNF512BQ96KM6 892 aaPredicted RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 CCDC74BQ96LY2 380 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 AARSD1Q9BTE6 412 aaKnown RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 MRPL4Q9BYD3 311 aaKnown RBP4.48□□□□□ -1.69
GPNMB-212ENST00000487890 KLHL25Q9H0H3 589 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 CRIM1Q9NZV1 1036 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 LRP2BPQ9P2M1 347 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 MAPRE3Q9UPY8 281 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 ZNF451Q9Y4E5 1061 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 TNRQ92752 1358 aa4.48□□□□□ -1.69
GPNMB-212ENST00000487890 PTPRKQ15262 1439 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 MAP3K1Q13233 1512 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 RNF17Q9BXT8 1623 aaKnown RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 DNAJC25-GNG10A0A024R161 153 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 CCDC194A0A1B0GVG4 234 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 DLL1O00548 723 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 DEAF1O75398 565 aaPredicted RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 CLEC3AO75596 197 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 EYA4O95677 639 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 NEFMP07197 916 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 FGFR1P11362 822 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 PMLP29590 882 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 CD68P34810 354 aaPredicted RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 HNRNPUQ00839 825 aaKnown RBP eCLIP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 COL9A3Q14050 684 aaPredicted RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 SLBPQ14493 270 aaKnown RBP eCLIP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 RNFT1Q5M7Z0 435 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 EXOSC6Q5RKV6 272 aaKnown RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 NSMFQ6X4W1 530 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 ZNF227Q86WZ6 799 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 GOLGA6L1Q8N7Z2 621 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 RNF214Q8ND24 703 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 ATL2Q8NHH9 583 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 SLC7A14Q8TBB6 771 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 ZNF507Q8TCN5 953 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 DDX1Q92499 740 aaKnown RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 TSR2Q969E8 191 aaKnown RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 PPP1R14AQ96A00 147 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 IPO9Q96P70 1041 aaKnown RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 FANCD2OSQ96PS1 177 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 MCM8Q9UJA3 840 aa4.47□□□□□ -1.69
GPNMB-212ENST00000487890 ZC3H13Q5T200 1668 aaKnown RBP4.47□□□□□ -1.69
GPNMB-212ENST00000487890 SYNGAP1Q96PV0 1343 aa4.46□□□□□ -1.69
GPNMB-212ENST00000487890 PTPRTO14522 1441 aa4.46□□□□□ -1.69
GPNMB-212ENST00000487890 EIF2AK4Q9P2K8 1649 aaKnown RBP4.46□□□□□ -1.69
GPNMB-212ENST00000487890 MAST1Q9Y2H9 1570 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 A2ML1A8K2U0 1454 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 PZPP20742 1482 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 KIF15Q9NS87 1388 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 ALG1L2C9J202 215 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 RBAK-RBAKDNI3L0D1 243 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 KATNA1O75449 491 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 ALDH1L1O75891 902 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 DNAJC8O75937 253 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 C6orf222P0C671 652 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 NAT2P11245 290 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 GUCY2FP51841 1108 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 SUMO1P63165 101 aaKnown RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 TTLL4Q14679 1199 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 LAPTM4AQ15012 233 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 TTF1Q15361 905 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 PCBP1Q15365 356 aaKnown RBP eCLIP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 HP1BP3Q5SSJ5 553 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 PRAMEF13Q5VWM6 474 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 LHFPL2Q6ZUX7 228 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 DDX46Q7L014 1031 aaKnown RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 ADAT2Q7Z6V5 191 aaKnown RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 CCDC144CPQ8IYA2 1237 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 LEO1Q8WVC0 666 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 ACDQ96AP0 544 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 BTBD6Q96KE9 485 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 MRGPRX3Q96LB0 322 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 COL25A1Q9BXS0 654 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms