RNA–Protein interactions for RNA: ENST00000487244.5

UBE4B-209, Transcript of ubiquitination factor E4B, humanhuman

TSL 1 (best)

Gene UBE4B, Length 818 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-209ENST00000487244 FAM47AQ5JRC9 791 aa8.53□□□□□ -1.04
UBE4B-209ENST00000487244 CWC27Q6UX04 472 aaKnown RBP8.53□□□□□ -1.04
UBE4B-209ENST00000487244 NKX2-3Q8TAU0 364 aa8.53□□□□□ -1.04
UBE4B-209ENST00000487244 CCDC17Q96LX7 622 aa8.53□□□□□ -1.04
UBE4B-209ENST00000487244 NACAP1Q9BZK3 213 aa8.53□□□□□ -1.04
UBE4B-209ENST00000487244 RPAP3Q9H6T3 665 aaPredicted RBP8.53□□□□□ -1.04
UBE4B-209ENST00000487244 MKNK2Q9HBH9 465 aa8.53□□□□□ -1.04
UBE4B-209ENST00000487244 TSR3Q9UJK0 312 aaKnown RBP8.53□□□□□ -1.04
UBE4B-209ENST00000487244 GABRQQ9UN88 632 aa8.53□□□□□ -1.04
UBE4B-209ENST00000487244 MKI67P46013 3256 aaKnown RBP8.53□□□□□ -1.04
UBE4B-209ENST00000487244 IGKV6D-41A0A0C4DH26 115 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 RNF40O75150 1001 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 CNMDO75829 334 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 FGAP02671 866 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 FECHP22830 423 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 USP14P54578 494 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 FCGRTP55899 365 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 HAND2P61296 217 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 PRKCZQ05513 592 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 PABPC4Q13310 644 aaKnown RBP eCLIP8.52□□□□□ -1.05
UBE4B-209ENST00000487244 CATSPERGQ6ZRH7 1159 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 SH3TC2Q8TF17 1288 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 PAGR1Q9BTK6 254 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 KANSL2Q9H9L4 492 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 ARHGEF10LQ9HCE6 1279 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 DIAPH3Q9NSV4 1193 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 RBPJLQ9UBG7 517 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 SRRDQ9UH36 339 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.52□□□□□ -1.05
UBE4B-209ENST00000487244 TMX2Q9Y320 296 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 PDE4DIPQ5VU43 2346 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 MYPNQ86TC9 1320 aa8.52□□□□□ -1.05
UBE4B-209ENST00000487244 PLIN4Q96Q06 1357 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L15C9J2P7 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L13C9JLJ4 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L11C9JVI0 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L18D6R9N7 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L22D6RA61 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L17D6RBQ6 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L19D6RCP7 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L20D6RJB6 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 TNPO2O14787 897 aaKnown RBP8.51□□□□□ -1.05
UBE4B-209ENST00000487244 NMT2O60551 498 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 MYCP01106 439 aaPredicted RBP8.51□□□□□ -1.05
UBE4B-209ENST00000487244 DNAJB2P25686 324 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 GCLCP48506 637 aaPredicted RBP8.51□□□□□ -1.05
UBE4B-209ENST00000487244 USP17L24Q0WX57 530 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 ALX1Q15699 326 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 Q3C1V9 767 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 SWT1Q5T5J6 900 aaKnown RBP8.51□□□□□ -1.05
UBE4B-209ENST00000487244 NYAP1Q6ZVC0 841 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 TICAM2Q86XR7 235 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 TBC1D10CQ8IV04 446 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 ARMC5Q96C12 935 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 CEP95Q96GE4 821 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 NUP88Q99567 741 aaPredicted RBP8.51□□□□□ -1.05
UBE4B-209ENST00000487244 TANGO6Q9C0B7 1094 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 PORCNQ9H237 461 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 VCPKMTQ9H867 229 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 BTBD7Q9P203 1132 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 MORF4L1Q9UBU8 362 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 ZMYM6O95789 1325 aa8.51□□□□□ -1.05
UBE4B-209ENST00000487244 ZNFX1Q9P2E3 1918 aaKnown RBP8.5□□□□□ -1.05
UBE4B-209ENST00000487244 SMCHD1A6NHR9 2005 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 RAD21O60216 631 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 GNRH1P01148 92 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 ELNP15502 786 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 FLT3LGP49771 235 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 ERVK-9P63128 1117 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 ERVK-24P63145 666 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 TFAP4Q01664 338 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 PDE4BQ07343 736 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 SLC9C1Q4G0N8 1177 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 FAM83BQ5T0W9 1011 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 CENPQQ7L2Z9 268 aaPredicted RBP8.5□□□□□ -1.05
UBE4B-209ENST00000487244 RASGRP2Q7LDG7 609 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 ZNF444Q8N0Y2 327 aaPredicted RBP8.5□□□□□ -1.05
UBE4B-209ENST00000487244 LRRC47Q8N1G4 583 aaKnown RBP8.5□□□□□ -1.05
UBE4B-209ENST00000487244 GPRC5AQ8NFJ5 357 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 NEDD1Q8NHV4 660 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 CHMP4CQ96CF2 233 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 ZNF333Q96JL9 665 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 FBXO28Q9NVF7 368 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 MTMR4Q9NYA4 1195 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 CLIP2Q9UDT6 1046 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 ANAPC4Q9UJX5 808 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 NEDD4P46934 1319 aa8.5□□□□□ -1.05
UBE4B-209ENST00000487244 RCCD1A6NED2 376 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 HIP1O00291 1037 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 ORC4O43929 436 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 FLOT1O75955 427 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 NDUFB10O96000 172 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 SLC3A2P08195 630 aaKnown RBP8.49□□□□□ -1.05
UBE4B-209ENST00000487244 TSPY3P0CV98 308 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 TSPY8P0CW00 308 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 CHMLP26374 656 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 ARHGEF6Q15052 776 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 RRP12Q5JTH9 1297 aaKnown RBP8.49□□□□□ -1.05
UBE4B-209ENST00000487244 LBX2Q6XYB7 198 aa8.49□□□□□ -1.05
UBE4B-209ENST00000487244 RAET1EQ8TD07 263 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms