RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 PABPC4Q13310 644 aaKnown RBP eCLIP20.42■□□□□ 0.86
CHMP3-207ENST00000485465 SLC35G1Q2M3R5 365 aa20.42■□□□□ 0.86
CHMP3-207ENST00000485465 CPLX2Q6PUV4 134 aaKnown RBP20.42■□□□□ 0.86
CHMP3-207ENST00000485465 CCDC82Q8N4S0 544 aa20.42■□□□□ 0.86
CHMP3-207ENST00000485465 SPZ1Q9BXG8 430 aa20.42■□□□□ 0.86
CHMP3-207ENST00000485465 FBXO28Q9NVF7 368 aa20.42■□□□□ 0.86
CHMP3-207ENST00000485465 BTBD19C9JJ37 291 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 FLOT1O75955 427 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 CDKL5O76039 1030 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 CTDNEP1O95476 244 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 INHBEP58166 350 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 NOGQ13253 232 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 SYDE2Q5VT97 1194 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 ANKRD23Q86SG2 305 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 PTPN18Q99952 460 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 SLF1Q9BQI6 1058 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 LLPHQ9BRT6 129 aaKnown RBP20.41■□□□□ 0.86
CHMP3-207ENST00000485465 RIOX1Q9H6W3 641 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 SLC45A1Q9Y2W3 748 aa20.41■□□□□ 0.86
CHMP3-207ENST00000485465 CYTH3O43739 400 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 HSPA6P17066 643 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 KIF23Q02241 960 aaPredicted RBP20.4■□□□□ 0.86
CHMP3-207ENST00000485465 COG2Q14746 738 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 ADGRF4Q8IZF3 695 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 PRPF38AQ8NAV1 312 aaKnown RBP20.4■□□□□ 0.86
CHMP3-207ENST00000485465 NSUN7Q8NE18 718 aaKnown RBP20.4■□□□□ 0.86
CHMP3-207ENST00000485465 KIFC2Q96AC6 838 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 VAT1LQ9HCJ6 419 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 PPP1R9AQ9ULJ8 1098 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 PRR12Q9ULL5 1215 aa20.4■□□□□ 0.86
CHMP3-207ENST00000485465 CNTNAP5Q8WYK1 1306 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 AOC2O75106 756 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 OSBPP22059 807 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 DSG3P32926 999 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 SREBF2Q12772 1141 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 SAMD1Q6SPF0 538 aaPredicted RBP20.39■□□□□ 0.85
CHMP3-207ENST00000485465 PHKBQ93100 1093 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 ZIC5Q96T25 663 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 ASCC2Q9H1I8 757 aaPredicted RBP20.39■□□□□ 0.85
CHMP3-207ENST00000485465 JMJD4Q9H9V9 463 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 HOXC10Q9NYD6 342 aa20.39■□□□□ 0.85
CHMP3-207ENST00000485465 MYPNQ86TC9 1320 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 WDR33Q9C0J8 1336 aaKnown RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 PDHXO00330 501 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 PRPF3O43395 683 aaKnown RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 DTNBO60941 627 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 PPFIA3O75145 1194 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 FMNL1O95466 1100 aaPredicted RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 TM4SF4P48230 202 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 IRX3P78415 501 aaPredicted RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 SSRP1Q08945 709 aaKnown RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 FAM43AQ8N2R8 423 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 SMARCC2Q8TAQ2 1214 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 INTS4Q96HW7 963 aaKnown RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 SLC26A6Q9BXS9 759 aa20.38■□□□□ 0.85
CHMP3-207ENST00000485465 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 V9GY48 417 aaPredicted RBP20.38■□□□□ 0.85
CHMP3-207ENST00000485465 PTPDC1A2A3K4 754 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 JAK2O60674 1132 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 VEGFBP49765 207 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 IFNL1Q8IU54 200 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 TRIM22Q8IYM9 498 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 MTMR8Q96EF0 704 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 RRP36Q96EU6 259 aaKnown RBP20.37■□□□□ 0.85
CHMP3-207ENST00000485465 P2RX7Q99572 595 aaKnown RBP20.37■□□□□ 0.85
CHMP3-207ENST00000485465 RNF26Q9BY78 433 aaPredicted RBP20.37■□□□□ 0.85
CHMP3-207ENST00000485465 PNMA3Q9UL41 463 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 ADAMTS5Q9UNA0 930 aa20.37■□□□□ 0.85
CHMP3-207ENST00000485465 STK36Q9NRP7 1315 aa20.36■□□□□ 0.85
CHMP3-207ENST00000485465 SPDYE16A6NNV3 312 aaPredicted RBP20.36■□□□□ 0.85
CHMP3-207ENST00000485465 IGF2BP3O00425 579 aaKnown RBP eCLIP20.36■□□□□ 0.85
CHMP3-207ENST00000485465 AKAP17AQ02040 695 aaKnown RBP20.36■□□□□ 0.85
CHMP3-207ENST00000485465 REM2Q8IYK8 340 aaPredicted RBP20.36■□□□□ 0.85
CHMP3-207ENST00000485465 PIBF1Q8WXW3 757 aa20.36■□□□□ 0.85
CHMP3-207ENST00000485465 ATG4CQ96DT6 458 aa20.36■□□□□ 0.85
CHMP3-207ENST00000485465 PIGSQ96S52 555 aa20.36■□□□□ 0.85
CHMP3-207ENST00000485465 RANBP17Q9H2T7 1088 aaKnown RBP20.36■□□□□ 0.85
CHMP3-207ENST00000485465 ZCCHC17Q9NP64 241 aaKnown RBP20.36■□□□□ 0.85
CHMP3-207ENST00000485465 hCG_1642624A0A1W2PR95 340 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 VWA5AO00534 786 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 HSP90AA1P07900 732 aaKnown RBP20.35■□□□□ 0.85
CHMP3-207ENST00000485465 FDX1P10109 184 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 SLC4A3P48751 1232 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 SNAP25P60880 206 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 HERVK_113P62684 666 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 HMGN5P82970 282 aaKnown RBP20.35■□□□□ 0.85
CHMP3-207ENST00000485465 CDC37Q16543 378 aaPredicted RBP20.35■□□□□ 0.85
CHMP3-207ENST00000485465 OTUD7BQ6GQQ9 843 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 HOMER1Q86YM7 354 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 DDX11Q96FC9 970 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 SLC38A10Q9HBR0 1119 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 FOXD4L1Q9NU39 408 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 RBM27Q9P2N5 1060 aaKnown RBP20.35■□□□□ 0.85
CHMP3-207ENST00000485465 ORC3Q9UBD5 711 aaPredicted RBP20.35■□□□□ 0.85
CHMP3-207ENST00000485465 SMC3Q9UQE7 1217 aa20.35■□□□□ 0.85
CHMP3-207ENST00000485465 PNMA6FA0A0J9YX94 578 aa20.34■□□□□ 0.85
CHMP3-207ENST00000485465 ZBTB5O15062 677 aa20.34■□□□□ 0.85
CHMP3-207ENST00000485465 ZBED4O75132 1171 aa20.34■□□□□ 0.85
CHMP3-207ENST00000485465 CYP2C8P10632 490 aa20.34■□□□□ 0.85
CHMP3-207ENST00000485465 FDPSP14324 419 aaKnown RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms