RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ANKRD34BA5PLL1 514 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 SYPP08247 313 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 GDNFP39905 211 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 ATG4DQ86TL0 474 aaPredicted RBP9.38□□□□□ -0.91
USP40-213ENST00000483216 FIBCD1Q8N539 461 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 FLAD1Q8NFF5 587 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 BRF1Q92994 677 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 SYTL4Q96C24 671 aaPredicted RBP9.38□□□□□ -0.91
USP40-213ENST00000483216 ADAMTS10Q9H324 1103 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 C19orf73Q9NVV2 129 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 CTNND2Q9UQB3 1225 aa9.38□□□□□ -0.91
USP40-213ENST00000483216 SF3B6Q9Y3B4 125 aaKnown RBP9.38□□□□□ -0.91
USP40-213ENST00000483216 PPM1BO75688 479 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 DDAH1O94760 285 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 ZNF205O95201 554 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 NAT2P11245 290 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 CRTC3Q6UUV7 619 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 ADAT2Q7Z6V5 191 aaKnown RBP9.37□□□□□ -0.91
USP40-213ENST00000483216 CKAP2LQ8IYA6 745 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 MICAL1Q8TDZ2 1067 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 DHX38Q92620 1227 aaKnown RBP9.37□□□□□ -0.91
USP40-213ENST00000483216 RCC1LQ96I51 464 aaKnown RBP9.37□□□□□ -0.91
USP40-213ENST00000483216 FGD4Q96M96 766 aa9.37□□□□□ -0.91
USP40-213ENST00000483216 TMEM82A0PJX8 343 aa9.36□□□□□ -0.91
USP40-213ENST00000483216 ZGLP1P0C6A0 271 aa9.36□□□□□ -0.91
USP40-213ENST00000483216 VAV1P15498 845 aa9.36□□□□□ -0.91
USP40-213ENST00000483216 ITGB5P18084 799 aa9.36□□□□□ -0.91
USP40-213ENST00000483216 ENDOUP21128 410 aaKnown RBP9.36□□□□□ -0.91
USP40-213ENST00000483216 RAB33AQ14088 237 aa9.36□□□□□ -0.91
USP40-213ENST00000483216 CWF19L1Q69YN2 538 aaKnown RBP9.36□□□□□ -0.91
USP40-213ENST00000483216 ZNF513Q8N8E2 541 aaPredicted RBP9.36□□□□□ -0.91
USP40-213ENST00000483216 SREK1Q8WXA9 508 aaKnown RBP9.36□□□□□ -0.91
USP40-213ENST00000483216 APBA2Q99767 749 aa9.36□□□□□ -0.91
USP40-213ENST00000483216 NOL6Q9H6R4 1146 aaKnown RBP9.36□□□□□ -0.91
USP40-213ENST00000483216 B2RBV5 119 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 H0Y8X5 98 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 BIN1O00499 593 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 GTF2F1P35269 517 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP40-213ENST00000483216 RBL2Q08999 1139 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 DDR2Q16832 855 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 NBPF6Q5VWK0 638 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 ARHGEF39Q8N4T4 335 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 CELF2-AS1Q8N7Q2 184 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 NBPF4Q96M43 638 aa9.35□□□□□ -0.91
USP40-213ENST00000483216 HIRIP3Q9BW71 556 aaPredicted RBP9.35□□□□□ -0.91
USP40-213ENST00000483216 GJB6O95452 261 aa9.34□□□□□ -0.91
USP40-213ENST00000483216 JUNBP17275 347 aaPredicted RBP9.34□□□□□ -0.91
USP40-213ENST00000483216 TAL1P17542 331 aaPredicted RBP9.34□□□□□ -0.91
USP40-213ENST00000483216 RPL10P27635 214 aaKnown RBP9.34□□□□□ -0.91
USP40-213ENST00000483216 DUSP4Q13115 394 aa9.34□□□□□ -0.91
USP40-213ENST00000483216 ADCY4Q8NFM4 1077 aa9.34□□□□□ -0.91
USP40-213ENST00000483216 LINC01599Q8WXQ3 324 aa9.34□□□□□ -0.91
USP40-213ENST00000483216 AFMP43652 599 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 NOP2P46087 812 aaKnown RBP9.33□□□□□ -0.92
USP40-213ENST00000483216 POU4F1Q01851 419 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 WAPLQ7Z5K2 1190 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 PDZD8Q8NEN9 1154 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 G6PC3Q9BUM1 346 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 SLC12A9Q9BXP2 914 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 TRIM55Q9BYV6 548 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 PPP1R1BQ9UD71 204 aaPredicted RBP9.33□□□□□ -0.92
USP40-213ENST00000483216 CGGBP1Q9UFW8 167 aaPredicted RBP9.33□□□□□ -0.92
USP40-213ENST00000483216 SUGT1Q9Y2Z0 365 aa9.33□□□□□ -0.92
USP40-213ENST00000483216 SUSD5O60279 629 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 FKTNO75072 461 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 HPXP02790 462 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 HK2P52789 917 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 GRB10Q13322 594 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 PPP2R5DQ14738 602 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 MCTP1Q6DN14 999 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 MRM1Q6IN84 353 aaKnown RBP9.32□□□□□ -0.92
USP40-213ENST00000483216 OXR1Q8N573 874 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 ZDHHC15Q96MV8 337 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 ST7Q9NRC1 585 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 APEX2Q9UBZ4 518 aa9.32□□□□□ -0.92
USP40-213ENST00000483216 PAPLNO95428 1278 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 CHRNEQ04844 493 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 RTP2Q5QGT7 225 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 EEPD1Q7L9B9 569 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 ANKS4BQ8N8V4 417 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 BVESQ8NE79 360 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 FCRL2Q96LA5 508 aaPredicted RBP9.31□□□□□ -0.92
USP40-213ENST00000483216 EPN3Q9H201 632 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 EBF1Q9UH73 591 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 ZMYM5Q9UJ78 669 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 AKT3Q9Y243 479 aa9.31□□□□□ -0.92
USP40-213ENST00000483216 FITM1A5D6W6 292 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 RAC2P15153 192 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 NR0B2Q15466 257 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 POMZP3Q6PJE2 187 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 ZPBP2Q6X784 338 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 SPPL2CQ8IUH8 684 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 CRACR2BQ8N4Y2 399 aaPredicted RBP9.3□□□□□ -0.92
USP40-213ENST00000483216 MAP6Q96JE9 813 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 FCRL3Q96P31 734 aaPredicted RBP9.3□□□□□ -0.92
USP40-213ENST00000483216 CDADC1Q9BWV3 514 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 SP110Q9HB58 689 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 EMC9Q9Y3B6 208 aa9.3□□□□□ -0.92
USP40-213ENST00000483216 GSTM1P09488 218 aa9.29□□□□□ -0.92
USP40-213ENST00000483216 KIR2DL1P43626 348 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms