RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 SNRNP48Q6IEG0 339 aaKnown RBP14.42□□□□□ -0.1
HDAC6-219ENST00000476625 C16orf59Q7L2K0 433 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 RNF180Q86T96 592 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 CLASRPQ8N2M8 674 aaKnown RBP14.42□□□□□ -0.1
HDAC6-219ENST00000476625 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.42□□□□□ -0.1
HDAC6-219ENST00000476625 FGD4Q96M96 766 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 COG6Q9Y2V7 657 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 ROBO3Q96MS0 1386 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 KCNA10Q16322 511 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 CCSAPQ6IQ19 270 aaPredicted RBP14.41□□□□□ -0.1
HDAC6-219ENST00000476625 CPXCR1Q8N123 301 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 KIF1BPQ96EK5 621 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 PPP1R12CQ9BZL4 782 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 SH2D4AQ9H788 454 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 STARD7Q9NQZ5 370 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 ATP8A2Q9NTI2 1148 aa14.41□□□□□ -0.1
HDAC6-219ENST00000476625 NDUFB10O96000 172 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 RASA1P20936 1047 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 TSHZ3Q63HK5 1081 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 KLHDC9Q8NEP7 349 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 HAUS7Q99871 368 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 RAVER2Q9HCJ3 691 aaKnown RBP14.4□□□□□ -0.1
HDAC6-219ENST00000476625 TBX21Q9UL17 535 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 UMODL1Q5DID0 1318 aa14.4□□□□□ -0.1
HDAC6-219ENST00000476625 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.39□□□□□ -0.11
HDAC6-219ENST00000476625 PRDM1O75626 825 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 CSF2RAP15509 400 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 ATP5JP18859 108 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 BEX3Q00994 111 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 TMEM63BQ5T3F8 832 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 RASGRP2Q7LDG7 609 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 ANKRD33Q7Z3H0 272 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 CCDC17Q96LX7 622 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 SLF1Q9BQI6 1058 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 PRDM12Q9H4Q4 367 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 ZNF576Q9H609 170 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 KANSL2Q9H9L4 492 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 EPB41L4AQ9HCS5 686 aaPredicted RBP14.39□□□□□ -0.11
HDAC6-219ENST00000476625 GOPCQ9HD26 462 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 CNPY2Q9Y2B0 182 aa14.39□□□□□ -0.11
HDAC6-219ENST00000476625 DNAJC25-GNG10A0A024R161 153 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 MINDY4BA8MYZ0 360 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 CTAGE5O15320 804 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 TIMP1P01033 207 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 ASGR1P07306 291 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 C6orf222P0C671 652 aaPredicted RBP14.38□□□□□ -0.11
HDAC6-219ENST00000476625 HSP90AB4PQ58FF6 505 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 TMEM240Q5SV17 173 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 TMED8Q6PL24 325 aaPredicted RBP14.38□□□□□ -0.11
HDAC6-219ENST00000476625 LRRC47Q8N1G4 583 aaKnown RBP14.38□□□□□ -0.11
HDAC6-219ENST00000476625 KIFC2Q96AC6 838 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 TIFAQ96CG3 184 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 PBX4Q9BYU1 374 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 HOMER2Q9NSB8 354 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.38□□□□□ -0.11
HDAC6-219ENST00000476625 NRBP1Q9UHY1 535 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 DIS3Q9Y2L1 958 aaKnown RBP14.38□□□□□ -0.11
HDAC6-219ENST00000476625 ASTN1O14525 1302 aa14.38□□□□□ -0.11
HDAC6-219ENST00000476625 SCN5AQ14524 2016 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 GSG1L2A8MUP6 293 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 DCDC2CA8MYV0 355 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 F5H6K3 240 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 CYP2C18P33260 490 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 SNAP25P60880 206 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 CNTN2Q02246 1040 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 KLRC3Q07444 240 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 CCDC85BQ15834 202 aaPredicted RBP14.37□□□□□ -0.11
HDAC6-219ENST00000476625 CCDC144BQ3MJ40 725 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 DDX11Q96FC9 970 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 TEX13BQ9BXU2 312 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 CXXC1Q9P0U4 656 aaPredicted RBP14.37□□□□□ -0.11
HDAC6-219ENST00000476625 CLIP2Q9UDT6 1046 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 FAM184BQ9ULE4 1060 aa14.37□□□□□ -0.11
HDAC6-219ENST00000476625 TCF20Q9UGU0 1960 aaKnown RBP14.36□□□□□ -0.11
HDAC6-219ENST00000476625 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.36□□□□□ -0.11
HDAC6-219ENST00000476625 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.36□□□□□ -0.11
HDAC6-219ENST00000476625 M0R2C6 588 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 CDK7P50613 346 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 ACVR2BQ13705 512 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 ADGRE1Q14246 886 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 UBE3CQ15386 1083 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 CCDC129Q6ZRS4 1044 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 ZNF365Q70YC5 407 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 MIER1Q8N108 512 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 OSBP2Q969R2 916 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 VTI1AQ96AJ9 217 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 STRBPQ96SI9 672 aaKnown RBP14.36□□□□□ -0.11
HDAC6-219ENST00000476625 TSEN34Q9BSV6 310 aaKnown RBP14.36□□□□□ -0.11
HDAC6-219ENST00000476625 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.36□□□□□ -0.112e-8■■■■□ 25.3
HDAC6-219ENST00000476625 KATNBL1Q9H079 304 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 ZBTB40Q9NUA8 1239 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 SYNGAP1Q96PV0 1343 aa14.36□□□□□ -0.11
HDAC6-219ENST00000476625 IGKV6D-41A0A0C4DH26 115 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 C20orf194Q5TEA3 1177 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 MFSD5Q6N075 450 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 MAMDC4Q6UXC1 1216 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 ARMCX2Q7L311 632 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 FAM126BQ8IXS8 530 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 AMOTL1Q8IY63 956 aa14.35□□□□□ -0.11
HDAC6-219ENST00000476625 CCDC144CPQ8IYA2 1237 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms