RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 CHURC1Q8WUH1 139 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 GMCL1Q96IK5 515 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 MAML3Q96JK9 1138 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 SLC38A10Q9HBR0 1119 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 INCENPQ9NQS7 918 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 IL17RBQ9NRM6 502 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 STX8Q9UNK0 236 aa14.28□□□□□ -0.12
SYNE1-223ENST00000476519 COLQQ9Y215 455 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-223ENST00000476519 CCDC171Q6TFL3 1326 aa14.27□□□□□ -0.12
SYNE1-223ENST00000476519 CYBAP13498 195 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 SLC1A4P43007 532 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 NT5C2P49902 561 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 ZNF792Q3KQV3 632 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 SNRNP48Q6IEG0 339 aaKnown RBP14.27□□□□□ -0.13
SYNE1-223ENST00000476519 FAM160B2Q86V87 743 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 TRPV1Q8NER1 839 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 STAG1Q8WVM7 1258 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 KIFC2Q96AC6 838 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 TCP11L1Q9NUJ3 509 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 PLXNB2O15031 1838 aa14.27□□□□□ -0.13
SYNE1-223ENST00000476519 TMEM232C9JQI7 657 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 SEPT4O43236 478 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 RCSD1Q6JBY9 416 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.26□□□□□ -0.13
SYNE1-223ENST00000476519 ZNF589Q86UQ0 364 aaPredicted RBP14.26□□□□□ -0.13
SYNE1-223ENST00000476519 MSL3Q8N5Y2 521 aaKnown RBP14.26□□□□□ -0.13
SYNE1-223ENST00000476519 ARRDC4Q8NCT1 418 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 CHST13Q8NET6 341 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 TTC14Q96N46 770 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 TINF2Q9BSI4 451 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 RNF41Q9H4P4 317 aaPredicted RBP14.26□□□□□ -0.13
SYNE1-223ENST00000476519 FBXO40Q9UH90 709 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 RIPK3Q9Y572 518 aa14.26□□□□□ -0.13
SYNE1-223ENST00000476519 PGK2P07205 417 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 MCCP23508 829 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 STAT2P52630 851 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 MFSD6Q6ZSS7 791 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 CPXCR1Q8N123 301 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 DDX11Q96FC9 970 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 DIAPH3Q9NSV4 1193 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 TACC3Q9Y6A5 838 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 RLFQ13129 1914 aa14.25□□□□□ -0.13
SYNE1-223ENST00000476519 TRIOBPQ9H2D6 2365 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 DNAJC25-GNG10A0A024R161 153 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 DNM1LO00429 736 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 NMT2O60551 498 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 TOP1P11387 765 aaKnown RBP14.24□□□□□ -0.13
SYNE1-223ENST00000476519 PRAMEF19Q5SWL8 479 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 AKNAD1Q5T1N1 836 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 CWC27Q6UX04 472 aaKnown RBP14.24□□□□□ -0.13
SYNE1-223ENST00000476519 CHRDL2Q6WN34 429 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 PRO3102Q9H379 93 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 RAVER2Q9HCJ3 691 aaKnown RBP14.24□□□□□ -0.13
SYNE1-223ENST00000476519 TOMM22Q9NS69 142 aa14.24□□□□□ -0.13
SYNE1-223ENST00000476519 PFASO15067 1338 aa14.23□□□□□ -0.13
SYNE1-223ENST00000476519 ZNF213O14771 459 aa14.23□□□□□ -0.13
SYNE1-223ENST00000476519 TKFCQ3LXA3 575 aa14.23□□□□□ -0.13
SYNE1-223ENST00000476519 RRP12Q5JTH9 1297 aaKnown RBP14.23□□□□□ -0.13
SYNE1-223ENST00000476519 MAMDC4Q6UXC1 1216 aa14.23□□□□□ -0.13
SYNE1-223ENST00000476519 ZNF467Q7Z7K2 595 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-223ENST00000476519 DCAF4Q8WV16 495 aa14.23□□□□□ -0.13
SYNE1-223ENST00000476519 CTNNA3Q9UI47 895 aa14.23□□□□□ -0.13
SYNE1-223ENST00000476519 GREB1LQ9C091 1923 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-223ENST00000476519 SLC4A3P48751 1232 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 HAND2P61296 217 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 IKQ13123 557 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-223ENST00000476519 CCDC178Q5BJE1 867 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 KCTD1Q719H9 257 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 ANKRD35Q8N283 1001 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 ESR2Q92731 530 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 TMEM47Q9BQJ4 181 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 DSCC1Q9BVC3 393 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 SENP6Q9GZR1 1112 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-223ENST00000476519 RBM27Q9P2N5 1060 aaKnown RBP14.22□□□□□ -0.13
SYNE1-223ENST00000476519 ISY1Q9ULR0 285 aaKnown RBP14.22□□□□□ -0.13
SYNE1-223ENST00000476519 CNPY2Q9Y2B0 182 aa14.22□□□□□ -0.13
SYNE1-223ENST00000476519 MYH8P13535 1937 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 SYNGAP1Q96PV0 1343 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 A0A1W2PPC1 479 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 RARBP10826 455 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 BTNL9Q6UXG8 535 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 DGKHQ86XP1 1220 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 C7orf61Q8IZ16 206 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 PNMA2Q9UL42 364 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 PRR12Q9ULL5 1215 aa14.21□□□□□ -0.13
SYNE1-223ENST00000476519 A0A0G2JMZ2 1700 aa14.21□□□□□ -0.14
SYNE1-223ENST00000476519 ZNF536O15090 1300 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 ZNF865P0CJ78 1059 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-223ENST00000476519 PDE4AP27815 886 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 BMP8BP34820 402 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 FXR1P51114 621 aaKnown RBP eCLIP14.2□□□□□ -0.14
SYNE1-223ENST00000476519 IMMTQ16891 758 aaKnown RBP14.2□□□□□ -0.14
SYNE1-223ENST00000476519 LRRC26Q2I0M4 334 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 TTC22Q5TAA0 569 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 AGBL1Q96MI9 1066 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 ACAD9Q9H845 621 aa14.2□□□□□ -0.14
SYNE1-223ENST00000476519 KBTBD13C9JR72 458 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 SNAI1O95863 264 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-223ENST00000476519 AKR1A1P14550 325 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 CCDC96Q2M329 555 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms