RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ADAM7Q9H2U9 754 aa6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 ERVK13-1Q9NX77 482 aa6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 PCDHA5Q9Y5H7 936 aa6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 TLR3O15455 904 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 GBP1P32455 592 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 CTSKP43235 329 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 PCBP3P57721 371 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 SLC14A2Q15849 920 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 OVOS1Q6IE37 1185 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 SLCO6A1Q86UG4 719 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 LDHDQ86WU2 507 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 TMEM52Q8NDY8 209 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 FCRL2Q96LA5 508 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 TNFRSF12AQ9NP84 129 aa6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 GPR55Q9Y2T6 319 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-212ENST00000474059 MINDY4BA8MYZ0 360 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 SIGLEC6O43699 453 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 ATE1O95260 518 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 CRKP46108 304 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 RTP1P59025 263 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 RNF4P78317 190 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 SNAP47Q5SQN1 464 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 CDCP2Q5VXM1 449 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 FBXL19Q6PCT2 694 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 ERMP1Q7Z2K6 904 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 ZDHHC14Q8IZN3 488 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 ZNF512BQ96KM6 892 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 BRMS1Q9HCU9 246 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 COPRSQ9NQ92 184 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 PLA2G2DQ9UNK4 145 aa6.59□□□□□ -1.35
CCDC88A-212ENST00000474059 SASH1O94885 1247 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 IGFBP6P24592 240 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 CNKSR3Q6P9H4 555 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 TMC6Q7Z403 805 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 PRRT2Q7Z6L0 340 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 ASCC2Q9H1I8 757 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 CNNM2Q9H8M5 875 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 LUC7LQ9NQ29 371 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 KBTBD4Q9NVX7 518 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 GMIPQ9P107 970 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 TNFRSF10DQ9UBN6 386 aa6.58□□□□□ -1.36
CCDC88A-212ENST00000474059 IRS2Q9Y4H2 1338 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 FFAR3O14843 346 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 GREM1O60565 184 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 ZNF205O95201 554 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 FBLN1P23142 703 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 NCKAP1LP55160 1127 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 CBX2Q14781 532 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 RELL1Q8IUW5 271 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 TMEM192Q8IY95 271 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 LINC01356Q8N9X3 169 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 ATG4CQ96DT6 458 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 ACSL6Q9UKU0 697 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 PCDHB14Q9Y5E9 798 aa6.57□□□□□ -1.36
CCDC88A-212ENST00000474059 CELA3BP08861 270 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 RAG1P15918 1043 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 EFEMP1Q12805 493 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 RTP2Q5QGT7 225 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 DBX2Q6ZNG2 339 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 TEPSINQ96N21 525 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 TRAIPQ9BWF2 469 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 ANTXR1Q9H6X2 564 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 EHMT1Q9H9B1 1298 aa6.56□□□□□ -1.36
CCDC88A-212ENST00000474059 PRICKLE3O43900 615 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 MSL3P1P0C860 447 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 RAB3GAP1Q15042 981 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 GALNT18Q6P9A2 607 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 RPTNQ6XPR3 784 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 SND1Q7KZF4 910 aaKnown RBP eCLIP6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 SP8Q8IXZ3 490 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 PWWP2AQ96N64 755 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 JMJD8Q96S16 334 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 CHST7Q9NS84 486 aa6.55□□□□□ -1.36
CCDC88A-212ENST00000474059 WTIPA6NIX2 430 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 ABLIM1O14639 778 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 SHOXO15266 292 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 ADRB1P08588 477 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 PRKCAP17252 672 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 BMP8BP34820 402 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 PLEKHN1Q494U1 663 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 VWA3BQ502W6 1294 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 GFOD1Q9NXC2 390 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 IMPACTQ9P2X3 320 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 HCFC2Q9Y5Z7 792 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 TAF6LQ9Y6J9 622 aa6.54□□□□□ -1.36
CCDC88A-212ENST00000474059 ZC3H12DA2A288 527 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 NUDT19A8MXV4 375 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 BUB1BO60566 1050 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 MPOP05164 745 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 LIMS1P48059 325 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 XPCQ01831 940 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 MVKQ03426 396 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 CLCQ05315 142 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 PWP1Q13610 501 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 CRTC3Q6UUV7 619 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 AP5S1Q9NUS5 200 aa6.53□□□□□ -1.36
CCDC88A-212ENST00000474059 SSU72P8A0A1W2PR75 194 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 MEIS1O00470 390 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 SORBS3O60504 671 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms