RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 ABRAQ8N0Z2 381 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 DIS3LQ8TF46 1054 aaKnown RBP21.21■□□□□ 0.99
UPF3A-203ENST00000474056 MMP19Q99542 508 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 ISY1Q9ULR0 285 aaKnown RBP21.21■□□□□ 0.99
UPF3A-203ENST00000474056 MCM3APO60318 1980 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 TMEM232C9JQI7 657 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 FCER1AP12319 257 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 MCCP23508 829 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 CYP2C19P33261 490 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 SLC1A4P43007 532 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 SNRNP48Q6IEG0 339 aaKnown RBP21.2■□□□□ 0.98
UPF3A-203ENST00000474056 MFSD6Q6ZSS7 791 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 GMCL1Q96IK5 515 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 TEX13BQ9BXU2 312 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 OGDHLQ9ULD0 1010 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 NEDD4P46934 1319 aa21.2■□□□□ 0.98
UPF3A-203ENST00000474056 OLFML2BQ68BL8 750 aa21.19■□□□□ 0.98
UPF3A-203ENST00000474056 CPXCR1Q8N123 301 aa21.19■□□□□ 0.98
UPF3A-203ENST00000474056 PAWRQ96IZ0 340 aaKnown RBP21.19■□□□□ 0.98
UPF3A-203ENST00000474056 DSCC1Q9BVC3 393 aa21.19■□□□□ 0.98
UPF3A-203ENST00000474056 SLC38A10Q9HBR0 1119 aa21.19■□□□□ 0.98
UPF3A-203ENST00000474056 MTMR7Q9Y216 660 aa21.19■□□□□ 0.98
UPF3A-203ENST00000474056 RIPK3Q9Y572 518 aa21.19■□□□□ 0.98
UPF3A-203ENST00000474056 ZNF213O14771 459 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 ATP2A1O14983 1001 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 ZBED4O75132 1171 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 PCP11498 1178 aaKnown RBP21.18■□□□□ 0.98
UPF3A-203ENST00000474056 COPB2P35606 906 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 MNX1P50219 401 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-203ENST00000474056 STAT2P52630 851 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 LHX8Q68G74 356 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 KCTD1Q719H9 257 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 ANKLE1Q8NAG6 615 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 TRPV1Q8NER1 839 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 HTATIP2Q9BUP3 242 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 RAVER2Q9HCJ3 691 aaKnown RBP21.18■□□□□ 0.98
UPF3A-203ENST00000474056 TCP11L1Q9NUJ3 509 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 SLC5A4Q9NY91 659 aa21.18■□□□□ 0.98
UPF3A-203ENST00000474056 CTDP1Q9Y5B0 961 aaPredicted RBP21.18■□□□□ 0.98
UPF3A-203ENST00000474056 PGK2P07205 417 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 CYBAP13498 195 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 SLC4A3P48751 1232 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 KCTD2Q14681 263 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 DPF3Q92784 378 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 MAML3Q96JK9 1138 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 TMEM47Q9BQJ4 181 aa21.17■□□□□ 0.98
UPF3A-203ENST00000474056 RNF41Q9H4P4 317 aaPredicted RBP21.17■□□□□ 0.98
UPF3A-203ENST00000474056 RAD50Q92878 1312 aa21.16■□□□□ 0.98
UPF3A-203ENST00000474056 IKQ13123 557 aaPredicted RBP21.16■□□□□ 0.98
UPF3A-203ENST00000474056 FAM160B2Q86V87 743 aa21.16■□□□□ 0.98
UPF3A-203ENST00000474056 CHURC1Q8WUH1 139 aa21.16■□□□□ 0.98
UPF3A-203ENST00000474056 TOP1P11387 765 aaKnown RBP21.15■□□□□ 0.98
UPF3A-203ENST00000474056 CHMLP26374 656 aa21.15■□□□□ 0.98
UPF3A-203ENST00000474056 CNGA1P29973 690 aa21.15■□□□□ 0.98
UPF3A-203ENST00000474056 ZNF792Q3KQV3 632 aa21.15■□□□□ 0.98
UPF3A-203ENST00000474056 RCSD1Q6JBY9 416 aa21.15■□□□□ 0.98
UPF3A-203ENST00000474056 NECAB2Q7Z6G3 386 aa21.15■□□□□ 0.98
UPF3A-203ENST00000474056 DCAF4Q8WV16 495 aa21.15■□□□□ 0.98
UPF3A-203ENST00000474056 LCTP09848 1927 aa21.14■□□□□ 0.98
UPF3A-203ENST00000474056 PLA2G6O60733 806 aa21.14■□□□□ 0.97
UPF3A-203ENST00000474056 OAZ1P54368 228 aa21.14■□□□□ 0.97
UPF3A-203ENST00000474056 IMMTQ16891 758 aaKnown RBP21.14■□□□□ 0.97
UPF3A-203ENST00000474056 CCDC96Q2M329 555 aa21.14■□□□□ 0.97
UPF3A-203ENST00000474056 ESR2Q92731 530 aa21.14■□□□□ 0.97
UPF3A-203ENST00000474056 ZKSCAN3Q9BRR0 538 aa21.14■□□□□ 0.97
UPF3A-203ENST00000474056 DDX20Q9UHI6 824 aaKnown RBP21.14■□□□□ 0.97
UPF3A-203ENST00000474056 MYH6P13533 1939 aa21.14■□□□□ 0.97
UPF3A-203ENST00000474056 ZNF536O15090 1300 aa21.13■□□□□ 0.97
UPF3A-203ENST00000474056 B4E1Z4 1266 aa21.13■□□□□ 0.97
UPF3A-203ENST00000474056 H0YGN5 161 aa21.13■□□□□ 0.97
UPF3A-203ENST00000474056 FDX1P10109 184 aa21.13■□□□□ 0.97
UPF3A-203ENST00000474056 PRAMEF19Q5SWL8 479 aa21.13■□□□□ 0.97
UPF3A-203ENST00000474056 PRR12Q9ULL5 1215 aa21.13■□□□□ 0.97
UPF3A-203ENST00000474056 DIS3Q9Y2L1 958 aaKnown RBP21.13■□□□□ 0.97
UPF3A-203ENST00000474056 PFASO15067 1338 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 KDM4AO75164 1064 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 SNAP25P60880 206 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 TTBK2Q6IQ55 1244 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.12■□□□□ 0.97
UPF3A-203ENST00000474056 RUFY2Q8WXA3 655 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 AGBL1Q96MI9 1066 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 C11orf49Q9H6J7 331 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 HOMER2Q9NSB8 354 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 CTNNA3Q9UI47 895 aa21.12■□□□□ 0.97
UPF3A-203ENST00000474056 FRMPD2Q68DX3 1309 aaPredicted RBP21.11■□□□□ 0.97
UPF3A-203ENST00000474056 MSCO60682 206 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 PDHBP11177 359 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 PTH1RQ03431 593 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 CCDC174Q6PII3 467 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 CHST13Q8NET6 341 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 DDX11Q96FC9 970 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 TTC14Q96N46 770 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 TINF2Q9BSI4 451 aa21.11■□□□□ 0.97
UPF3A-203ENST00000474056 DNAJC25-GNG10A0A024R161 153 aa21.1■□□□□ 0.97
UPF3A-203ENST00000474056 SEPT4O43236 478 aa21.1■□□□□ 0.97
UPF3A-203ENST00000474056 SLC16A2P36021 539 aa21.1■□□□□ 0.97
UPF3A-203ENST00000474056 ANO1Q5XXA6 986 aa21.1■□□□□ 0.97
UPF3A-203ENST00000474056 BTNL9Q6UXG8 535 aa21.1■□□□□ 0.97
UPF3A-203ENST00000474056 SKAP1Q86WV1 359 aa21.1■□□□□ 0.97
UPF3A-203ENST00000474056 FBXO40Q9UH90 709 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms