RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SUGT1	Q9Y2Z0	365 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	MRPL42	Q9Y6G3	142 aa	Known RBP	5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	NOP56	O00567	594 aa	Known RBP	5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	GSN	P06396	782 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	FURIN	P09958	794 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	CANX	P27824	592 aa	Known RBP	5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	HSP90AA2P	Q14568	343 aa	Predicted RBP	5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	GAB4	Q2WGN9	574 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	ZNF227	Q86WZ6	799 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	TRIM59	Q8IWR1	403 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	PLD6	Q8N2A8	252 aa	Known RBP	5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	FIBCD1	Q8N539	461 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	BRF1	Q92994	677 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	HSPA12B	Q96MM6	686 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	LRRC4C	Q9HCJ2	640 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	LRP2BP	Q9P2M1	347 aa		5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	SF3B6	Q9Y3B4	125 aa	Known RBP	5.71	□□□□□ -1.5
PTCD3-209	ENST00000472044	CCDC163	A0A0D9SF12	145 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	TGFB1	P01137	390 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	ITIH2	P19823	946 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	CTSK	P43235	329 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	PPP2R2A	P63151	447 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	MSMP	Q1L6U9	139 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	CLEC16A	Q2KHT3	1053 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	CDKAL1	Q5VV42	579 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	INTS5	Q6P9B9	1019 aa	Known RBP	5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	ADCY4	Q8NFM4	1077 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	TCTN2	Q96GX1	697 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	SLC26A8	Q96RN1	970 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	DSCC1	Q9BVC3	393 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	SEMA6B	Q9H3T3	888 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	NOL6	Q9H6R4	1146 aa	Known RBP	5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	KANSL2	Q9H9L4	492 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	ARHGEF4	Q9NR80	690 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	RNF112	Q9ULX5	631 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	PITPNM2	Q9BZ72	1349 aa		5.7	□□□□□ -1.5
PTCD3-209	ENST00000472044	FAM153B	P0C7A2	387 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	FGFR1	P11362	822 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	HSD3B2	P26439	372 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	TPP2	P29144	1249 aa	Predicted RBP	5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	HOXA10	P31260	410 aa	Predicted RBP	5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	BMP8B	P34820	402 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	GRIK1	P39086	918 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	POU4F1	Q01851	419 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	PRKCQ	Q04759	706 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	SQSTM1	Q13501	440 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	TMPRSS7	Q7RTY8	843 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	USHBP1	Q8N6Y0	703 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	LINC00116	Q8NCU8	138 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	ZSWIM2	Q8NEG5	633 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	ASB11	Q8WXH4	323 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	MISP3	Q96FF7	219 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	CCDC140	Q96MF4	163 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	AARSD1	Q9BTE6	412 aa	Known RBP	5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	VAV3	Q9UKW4	847 aa		5.69	□□□□□ -1.5
PTCD3-209	ENST00000472044	TRAV20	A0A0B4J274	112 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044		H0Y8X5	98 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044		H3BS24	57 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	SCG5	P05408	212 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	ITGB7	P26010	798 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	HOXC12	P31275	282 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	NOP2	P46087	812 aa	Known RBP	5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	AMPD2	Q01433	879 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	PLEKHG4	Q58EX7	1191 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	TMEM67	Q5HYA8	995 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	EGFLAM	Q63HQ2	1017 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	HOMER1	Q86YM7	354 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	SCUBE1	Q8IWY4	988 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	SYNPO	Q8N3V7	929 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	APPBP2	Q92624	585 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	KISS1R	Q969F8	398 aa	Predicted RBP	5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	UBE2F	Q969M7	185 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	PPP1R14A	Q96A00	147 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	HRASLS5	Q96KN8	279 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	NKX2-4	Q9H2Z4	354 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	CWC22	Q9HCG8	908 aa	Known RBP	5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	CYP26B1	Q9NR63	512 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	ZSWIM5	Q9P217	1185 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	MINPP1	Q9UNW1	487 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	PTCH2	Q9Y6C5	1203 aa		5.68	□□□□□ -1.5
PTCD3-209	ENST00000472044	ESYT3	A0FGR9	886 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	TBX1	O43435	398 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	COBL	O75128	1261 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	KCNH1	O95259	989 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	PRNP	P04156	253 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	PPP2R5D	Q14738	602 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	CWF19L1	Q69YN2	538 aa	Known RBP	5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	GTF2IRD2B	Q6EKJ0	949 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	GTF2IRD2	Q86UP8	949 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	FAM177A1	Q8N128	213 aa	Predicted RBP	5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	ZDHHC15	Q96MV8	337 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	LGR4	Q9BXB1	951 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	BSDC1	Q9NW68	430 aa	Predicted RBP	5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	ZNF281	Q9Y2X9	895 aa		5.67	□□□□□ -1.5
PTCD3-209	ENST00000472044	WASH4P	A8MWX3	477 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	AURKA	O14965	403 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	VAMP4	O75379	141 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	ZNF205	O95201	554 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	CP	P00450	1065 aa		5.66	□□□□□ -1.5
PTCD3-209	ENST00000472044	ESR1	P03372	595 aa		5.66	□□□□□ -1.5

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