RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CTAGE15A4D2H0 777 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 H7C1D1 291 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 KIF3CO14782 793 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 GCP02774 474 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CTAGE8P0CG41 777 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 KIF6Q6ZMV9 814 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CTAGE6Q86UF2 777 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 APLFQ8IW19 511 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CTAGE4Q8IX94 777 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NCOA7Q8NI08 942 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SGSM3Q96HU1 749 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 GTPBP6O43824 516 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NDUFA10O95299 355 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SNRPA1P09661 255 aaKnown RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 MYL6BP14649 208 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 TCP1P17987 556 aaKnown RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 GCKP35557 465 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 RASA2Q15283 850 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SLC15A2Q16348 729 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC142Q17RM4 750 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NBPF9Q3BBW0 867 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CCDC43Q96MW1 224 aaKnown RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SIL1Q9H173 461 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 TBC1D30Q9Y2I9 924 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CEP83Q9Y592 693 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 AK9Q5TCS8 1911 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 POSTNQ15063 836 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 STK38Q15208 465 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CCT6BQ92526 530 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 DUSP9Q99956 384 aaKnown RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SDF4Q9BRK5 362 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 FAM169AQ9Y6X4 670 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 A6NHS1 94 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 CCT5P48643 541 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NLRP6P59044 892 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 MTF1Q14872 753 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 MPNDQ8N594 471 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF317Q96PQ6 595 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 THAP9Q9H5L6 903 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 TLE6Q9H808 572 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 HOMER3Q9NSC5 361 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 OAS1P00973 400 aaKnown RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 HERVK_113P62684 666 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF530Q6P9A1 599 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 TBC1D10CQ8IV04 446 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 TMTC2Q8N394 836 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 KCTD17Q8N5Z5 321 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 OR8K1Q8NGG5 319 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NCSTNQ92542 709 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 RUFY1Q96T51 708 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 GPHNQ9NQX3 736 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 MCM8Q9UJA3 840 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 USP20Q9Y2K6 914 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 GRID2IPA4D2P6 1211 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 F8W031 263 aaPredicted RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 ABL1P00519 1130 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 PIP4K2AP48426 406 aaPredicted RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 EPHB4P54760 987 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 MIIPQ5JXC2 388 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 RAPGEF4Q8WZA2 1011 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 OSBPL7Q9BZF2 842 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 BATF3Q9NR55 127 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 BCORQ6W2J9 1755 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 PLIN4Q96Q06 1357 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 ARFGEF2Q9Y6D5 1785 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 PRC1O43663 620 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 ORC4O43929 436 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 RNF40O75150 1001 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 VAV2P52735 878 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 SLC18A1P54219 525 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 SATB1Q01826 763 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 TFCP2Q12800 502 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 CRACR2BQ8N4Y2 399 aaPredicted RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 EDC3Q96F86 508 aaKnown RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 EPB41L4BQ9H329 900 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 STK32BQ9NY57 414 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 KIF13AQ9H1H9 1805 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 PPIP5K2O43314 1243 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 TCEA3O75764 348 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 CHGBP05060 677 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 HNRNPH1P31943 449 aaKnown RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 PLCD3Q8N3E9 789 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 RASGEF1CQ8N431 466 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 LRRC57Q8N9N7 239 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 MBOAT7Q96N66 472 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 TLR2O60603 784 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 ME1P48163 572 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 CRYMQ14894 314 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 KRT31Q15323 416 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 CLEC16AQ2KHT3 1053 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 FILIP1LQ4L180 1135 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 USP49Q70CQ1 688 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 FUKQ8N0W3 1084 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 SLCO2A1Q92959 643 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 ERVV-2B6SEH9 535 aa6□□□□□ -1.45
SYNE1-220ENST00000471834 URI1O94763 535 aaPredicted RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 IRX3P78415 501 aaPredicted RBP6□□□□□ -1.45
SYNE1-220ENST00000471834 WASF1Q92558 559 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms