RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 GJD2Q9UKL4 321 aa17.92■□□□□ 0.46
SDC3-203ENST00000471567 ZNF214Q9UL59 606 aaPredicted RBP17.92■□□□□ 0.46
SDC3-203ENST00000471567 GABRQQ9UN88 632 aa17.92■□□□□ 0.46
SDC3-203ENST00000471567 MTMR7Q9Y216 660 aa17.92■□□□□ 0.46
SDC3-203ENST00000471567 CTDP1Q9Y5B0 961 aaPredicted RBP17.92■□□□□ 0.46
SDC3-203ENST00000471567 STRNO43815 780 aa17.91■□□□□ 0.46
SDC3-203ENST00000471567 HSPA4P34932 840 aa17.91■□□□□ 0.46
SDC3-203ENST00000471567 OAZ1P54368 228 aa17.91■□□□□ 0.46
SDC3-203ENST00000471567 ANTXR2P58335 489 aa17.91■□□□□ 0.46
SDC3-203ENST00000471567 ZNF543Q08ER8 600 aa17.91■□□□□ 0.46
SDC3-203ENST00000471567 IKQ13123 557 aaPredicted RBP17.91■□□□□ 0.46
SDC3-203ENST00000471567 NUDT12Q9BQG2 462 aa17.91■□□□□ 0.46
SDC3-203ENST00000471567 DOCK3Q8IZD9 2030 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 SLC15A5A6NIM6 579 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 EIF5BO60841 1220 aaKnown RBP17.9■□□□□ 0.46
SDC3-203ENST00000471567 ERCC3P19447 782 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 PTPREP23469 700 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 WTAPQ15007 396 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 TMEM67Q5HYA8 995 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 MORN1Q5T089 497 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 RASGRP2Q7LDG7 609 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 NBPF11Q86T75 865 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 RASEFQ8IZ41 740 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 IGDCC4Q8TDY8 1250 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 PXYLP1Q8TE99 480 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 ARMC5Q96C12 935 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 CHMP4CQ96CF2 233 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 TMEM87BQ96K49 555 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 NEK1Q96PY6 1258 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 TEX13BQ9BXU2 312 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 PRR12Q9ULL5 1215 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 IVNS1ABPQ9Y6Y0 642 aa17.9■□□□□ 0.46
SDC3-203ENST00000471567 PRC1O43663 620 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 GRK4P32298 578 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 SLC9C1Q4G0N8 1177 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 ASPRV1Q53RT3 343 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 WDR78Q5VTH9 848 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 TTBK2Q6IQ55 1244 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 CHST3Q7LGC8 479 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 NCAPG2Q86XI2 1143 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 TMTC2Q8N394 836 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 SLAIN1Q8ND83 568 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 USP6NLQ92738 828 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 GPCPD1Q9NPB8 672 aa17.89■□□□□ 0.45
SDC3-203ENST00000471567 FRMPD2Q68DX3 1309 aaPredicted RBP17.89■□□□□ 0.45
SDC3-203ENST00000471567 ADCY3O60266 1144 aa17.88■□□□□ 0.45
SDC3-203ENST00000471567 HMGB1P09429 215 aaKnown RBP17.88■□□□□ 0.45
SDC3-203ENST00000471567 XRCC5P13010 732 aaKnown RBP17.88■□□□□ 0.45
SDC3-203ENST00000471567 RGS2P41220 211 aa17.88■□□□□ 0.45
SDC3-203ENST00000471567 SYDE2Q5VT97 1194 aa17.88■□□□□ 0.45
SDC3-203ENST00000471567 SNRNP48Q6IEG0 339 aaKnown RBP17.88■□□□□ 0.45
SDC3-203ENST00000471567 ABRAQ8N0Z2 381 aa17.88■□□□□ 0.45
SDC3-203ENST00000471567 USP26Q9BXU7 913 aa17.88■□□□□ 0.45
SDC3-203ENST00000471567 WDR19Q8NEZ3 1342 aa17.88■□□□□ 0.45
SDC3-203ENST00000471567 COL11A1P12107 1806 aaPredicted RBP17.87■□□□□ 0.45
SDC3-203ENST00000471567 PARP1P09874 1014 aaKnown RBP17.87■□□□□ 0.45
SDC3-203ENST00000471567 SLC16A2P36021 539 aa17.87■□□□□ 0.45
SDC3-203ENST00000471567 MAP2K5Q13163 448 aa17.87■□□□□ 0.45
SDC3-203ENST00000471567 GRB14Q14449 540 aa17.87■□□□□ 0.45
SDC3-203ENST00000471567 DHX32Q7L7V1 743 aaKnown RBP17.87■□□□□ 0.45
SDC3-203ENST00000471567 TRMT44Q8IYL2 757 aaKnown RBP17.87■□□□□ 0.45
SDC3-203ENST00000471567 CPXCR1Q8N123 301 aa17.87■□□□□ 0.45
SDC3-203ENST00000471567 RANBP17Q9H2T7 1088 aaKnown RBP17.87■□□□□ 0.45
SDC3-203ENST00000471567 LY9Q9HBG7 655 aa17.87■□□□□ 0.45
SDC3-203ENST00000471567 RAVER2Q9HCJ3 691 aaKnown RBP17.87■□□□□ 0.45
SDC3-203ENST00000471567 SH2B2O14492 632 aaPredicted RBP17.86■□□□□ 0.45
SDC3-203ENST00000471567 FCER1AP12319 257 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 LIFRP42702 1097 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 EXOSC10Q01780 885 aaKnown RBP17.86■□□□□ 0.45
SDC3-203ENST00000471567 TKFCQ3LXA3 575 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 ADCK5Q3MIX3 580 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 CATIPQ7Z7H3 387 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 ZNF333Q96JL9 665 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 SENP2Q9HC62 589 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 FBXO40Q9UH90 709 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 PNMA2Q9UL42 364 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 SNX14Q9Y5W7 946 aa17.86■□□□□ 0.45
SDC3-203ENST00000471567 CCDC85CA6NKD9 419 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 PLXNB2O15031 1838 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 ZNF536O15090 1300 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 HOXC6P09630 235 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 GOLGA8HP0CJ92 632 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 CYP2B6P20813 491 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 TROAPQ12815 778 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.85■□□□□ 0.458e-7■■■■■ 52
SDC3-203ENST00000471567 CHST13Q8NET6 341 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 SH3TC2Q8TF17 1288 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 MAP3K14Q99558 947 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 APBA2Q99767 749 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 SLC5A4Q9NY91 659 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 RIPK3Q9Y572 518 aa17.85■□□□□ 0.45
SDC3-203ENST00000471567 PALM3A6NDB9 673 aaPredicted RBP17.84■□□□□ 0.45
SDC3-203ENST00000471567 DDAH1O94760 285 aa17.84■□□□□ 0.45
SDC3-203ENST00000471567 ICAM1P05362 532 aa17.84■□□□□ 0.45
SDC3-203ENST00000471567 PSMA5P28066 241 aa17.84■□□□□ 0.45
SDC3-203ENST00000471567 ADORA2AP29274 412 aa17.84■□□□□ 0.45
SDC3-203ENST00000471567 UBXN2AP68543 259 aa17.84■□□□□ 0.45
SDC3-203ENST00000471567 COL9A3Q14050 684 aaPredicted RBP17.84■□□□□ 0.45
SDC3-203ENST00000471567 KCTD2Q14681 263 aa17.84■□□□□ 0.45
SDC3-203ENST00000471567 GRM4Q14833 912 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms