RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 PEX10O60683 326 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 CNMDO75829 334 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 BCRP11274 1271 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 PDIA3P30101 505 aaKnown RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 RCAN1P53805 252 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 ANKRD1Q15327 319 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 SYDE2Q5VT97 1194 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 SAMD1Q6SPF0 538 aaPredicted RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 C17orf99Q6UX52 265 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 PRPF38AQ8NAV1 312 aaKnown RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 FANCBQ8NB91 859 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 REPS2Q8NFH8 660 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 CTCFLQ8NI51 663 aaPredicted RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 SMCR8Q8TEV9 937 aaPredicted RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 KIFC2Q96AC6 838 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 UBA5Q9GZZ9 404 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 TXNRD2Q9NNW7 524 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 FAM217BQ9NTX9 383 aaPredicted RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 RBPJLQ9UBG7 517 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 CPA4Q9UI42 421 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 PRR12Q9ULL5 1215 aa12.31□□□□□ -0.44
SMC1A-206ENST00000470241 NAP1L2Q9ULW6 460 aaPredicted RBP12.31□□□□□ -0.44
SMC1A-206ENST00000470241 NID2Q14112 1375 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 GOLGA8AA7E2F4 631 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 KLRF2D3W0D1 207 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 VWA5AO00534 786 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 PLEKHA8P1O95397 391 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 CDC27P30260 824 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 GCLCP48506 637 aaPredicted RBP12.3□□□□□ -0.44
SMC1A-206ENST00000470241 IKQ13123 557 aaPredicted RBP12.3□□□□□ -0.44
SMC1A-206ENST00000470241 NOL8Q76FK4 1167 aaKnown RBP12.3□□□□□ -0.44
SMC1A-206ENST00000470241 NBPF11Q86T75 865 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 GTF3C2Q8WUA4 911 aaPredicted RBP12.3□□□□□ -0.44
SMC1A-206ENST00000470241 ZNF274Q96GC6 653 aaPredicted RBP12.3□□□□□ -0.44
SMC1A-206ENST00000470241 BEGAINQ9BUH8 593 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 BTBD7Q9P203 1132 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 MORF4L1Q9UBU8 362 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 TSKSQ9UJT2 592 aa12.3□□□□□ -0.44
SMC1A-206ENST00000470241 CYTH3O43739 400 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 LARGE1O95461 756 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 KIF5BP33176 963 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 GNAQP50148 359 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 METAP2P50579 478 aaKnown RBP eCLIP12.29□□□□□ -0.449e-6■■■□□ 16
SMC1A-206ENST00000470241 SNAP25P60880 206 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 TMEM132BQ14DG7 1078 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 RTN1Q16799 776 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 TMTC3Q6ZXV5 915 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 ADGRF4Q8IZF3 695 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 CMTR1Q8N1G2 835 aaKnown RBP12.29□□□□□ -0.44
SMC1A-206ENST00000470241 SRBD1Q8N5C6 995 aaKnown RBP12.29□□□□□ -0.44
SMC1A-206ENST00000470241 ANKRD13CQ8N6S4 541 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 MB21D1Q8N884 522 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 PAGR1Q9BTK6 254 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 RANBP17Q9H2T7 1088 aaKnown RBP12.29□□□□□ -0.44
SMC1A-206ENST00000470241 JMJD4Q9H9V9 463 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 SLC38A10Q9HBR0 1119 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 RBM28Q9NW13 759 aaKnown RBP12.29□□□□□ -0.44
SMC1A-206ENST00000470241 RABGAP1Q9Y3P9 1069 aa12.29□□□□□ -0.44
SMC1A-206ENST00000470241 GPR25O00155 361 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 PFKFB2O60825 505 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ZBED4O75132 1171 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 CD2BP2O95400 341 aaKnown RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 HSPA1AP0DMV8 641 aaKnown RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 HSPA1BP0DMV9 641 aaKnown RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 FDX1P10109 184 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 SMARCA1P28370 1054 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ADD1P35611 737 aaKnown RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ERVK-9P63128 1117 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ERVK-24P63145 666 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 CCT2P78371 535 aaKnown RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 FUT2Q10981 343 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ME3Q16798 604 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 FAM110CQ1W6H9 321 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 Q3C1V9 767 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 IL27Q8NEV9 243 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 MTMR8Q96EF0 704 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 LZTS2Q9BRK4 669 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 RIOX1Q9H6W3 641 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 NCOA5Q9HCD5 579 aaKnown RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 VAT1LQ9HCJ6 419 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ZNF214Q9UL59 606 aaPredicted RBP12.28□□□□□ -0.44
SMC1A-206ENST00000470241 LIMCH1Q9UPQ0 1083 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 ZNF536O15090 1300 aa12.28□□□□□ -0.44
SMC1A-206ENST00000470241 RLFQ13129 1914 aa12.27□□□□□ -0.44
SMC1A-206ENST00000470241 ATP2A1O14983 1001 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 ST18O60284 1047 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 SCRN1Q12765 414 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 STK3Q13188 491 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 PPP2R5BQ15173 497 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 NTRK3Q16288 839 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 NOM1Q5C9Z4 860 aaKnown RBP12.27□□□□□ -0.45
SMC1A-206ENST00000470241 CCDC174Q6PII3 467 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 GPRC5AQ8NFJ5 357 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 SPZ1Q9BXG8 430 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 SPATC1LQ9H0A9 340 aa12.27□□□□□ -0.45
SMC1A-206ENST00000470241 RAVER2Q9HCJ3 691 aaKnown RBP12.27□□□□□ -0.45
SMC1A-206ENST00000470241 CCDC196A0A1B0GTZ2 297 aa12.26□□□□□ -0.45
SMC1A-206ENST00000470241 FOXN1O15353 648 aa12.26□□□□□ -0.45
SMC1A-206ENST00000470241 DHX16O60231 1041 aaKnown RBP12.26□□□□□ -0.45
SMC1A-206ENST00000470241 HSPA8P11142 646 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms