RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 BMP3P12645 472 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 DNAJA1P31689 397 aaKnown RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 ZEB1P37275 1124 aaPredicted RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 USP11P51784 963 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 ETF1P62495 437 aaKnown RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 TMEM201Q5SNT2 666 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 UBE3DQ7Z6J8 389 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 FAM20CQ8IXL6 584 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 SMYD4Q8IYR2 804 aaPredicted RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 ZNF507Q8TCN5 953 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 FBLIM1Q8WUP2 373 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 DDX17Q92841 729 aaKnown RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 PUS7Q96PZ0 661 aaKnown RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 SEMA6CQ9H3T2 930 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 FBRSQ9HAH7 460 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 PICK1Q9NRD5 415 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 REV1Q9UBZ9 1251 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 ADAM30Q9UKF2 790 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 PPT2Q9UMR5 302 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 ACEP12821 1306 aa8.47□□□□□ -1.05
PTCD3-208ENST00000469585 MED1Q15648 1581 aaPredicted RBP8.47□□□□□ -1.05
PTCD3-208ENST00000469585 ATP7BP35670 1465 aa8.46□□□□□ -1.05
PTCD3-208ENST00000469585 PGRP06401 933 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 PLCG1P19174 1290 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 RAB6AP20340 208 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 MCF2L2Q86YR7 1114 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 PRKAG2Q9UGJ0 569 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 ZNRF3Q9ULT6 936 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 SPATA31A3Q5VYP0 1347 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 PNPLA6Q8IY17 1366 aa8.46□□□□□ -1.06
PTCD3-208ENST00000469585 RNGTTO60942 597 aaKnown RBP8.45□□□□□ -1.06
PTCD3-208ENST00000469585 NFICP08651 508 aa8.45□□□□□ -1.06
PTCD3-208ENST00000469585 MAP4P27816 1152 aaKnown RBP8.45□□□□□ -1.06
PTCD3-208ENST00000469585 SEZ6L2Q6UXD5 910 aa8.45□□□□□ -1.06
PTCD3-208ENST00000469585 HID1Q8IV36 788 aa8.45□□□□□ -1.06
PTCD3-208ENST00000469585 ACSF2Q96CM8 615 aaPredicted RBP8.45□□□□□ -1.06
PTCD3-208ENST00000469585 TPSG1Q9NRR2 321 aa8.45□□□□□ -1.06
PTCD3-208ENST00000469585 TJP2Q9UDY2 1190 aa8.45□□□□□ -1.06
PTCD3-208ENST00000469585 PCOLCE2Q9UKZ9 415 aa8.45□□□□□ -1.06
PTCD3-208ENST00000469585 KTN1Q86UP2 1357 aaKnown RBP8.45□□□□□ -1.06
PTCD3-208ENST00000469585 DHX15O43143 795 aaKnown RBP8.44□□□□□ -1.06
PTCD3-208ENST00000469585 DNAJA2O60884 412 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 CAP2P40123 477 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 NKG7Q16617 165 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 MCATQ8IVS2 390 aaKnown RBP8.44□□□□□ -1.06
PTCD3-208ENST00000469585 KCT2Q8NC54 265 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 SREK1Q8WXA9 508 aaKnown RBP8.44□□□□□ -1.06
PTCD3-208ENST00000469585 TP53INP1Q96A56 240 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 FERD3LQ96RJ6 166 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.44□□□□□ -1.061e-13■■□□□ 13.9
PTCD3-208ENST00000469585 YIPF2Q9BWQ6 316 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 STRIP2Q9ULQ0 834 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 TTC21AQ8NDW8 1320 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 PXDNQ92626 1479 aa8.44□□□□□ -1.06
PTCD3-208ENST00000469585 RGPD8O14715 1765 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 PROCP04070 461 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 SLBPQ14493 270 aaKnown RBP eCLIP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 CCDC81Q6ZN84 652 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 MRPL41Q8IXM3 137 aaKnown RBP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 RBBP8NLQ8NC74 664 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 KCNH5Q8NCM2 988 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 SHDQ96IW2 340 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 SRRTQ9BXP5 876 aaKnown RBP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 TANGO6Q9C0B7 1094 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 PRDM11Q9NQV5 511 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 DAGLAQ9Y4D2 1042 aa8.43□□□□□ -1.06
PTCD3-208ENST00000469585 POLR3AO14802 1390 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-208ENST00000469585 FAM95CA0A1B0GW59 222 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 MEIS3P2A8K0S8 358 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 DYNC1LI2O43237 492 aaPredicted RBP8.42□□□□□ -1.06
PTCD3-208ENST00000469585 IMPDH2P12268 514 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 EVA1CP58658 441 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 MAP7Q14244 749 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 SF3A1Q15459 793 aaKnown RBP8.42□□□□□ -1.06
PTCD3-208ENST00000469585 SLC6A19Q695T7 634 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 BEND4Q6ZU67 534 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 CDC37L1Q7L3B6 337 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 CLEC10AQ8IUN9 316 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 TMEM87BQ96K49 555 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 PSMG3-AS1Q96PY0 264 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 FAM83CQ9BQN1 747 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 KCNF1Q9H3M0 494 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 ANTXR1Q9H6X2 564 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 AFF2P51816 1311 aa8.42□□□□□ -1.06
PTCD3-208ENST00000469585 SLC22A31A6NKX4 558 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 RXRBP28702 533 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 GIPRP48546 466 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 PRR23CQ6ZRP0 262 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 SSU72Q9NP77 194 aaKnown RBP8.41□□□□□ -1.06
PTCD3-208ENST00000469585 C1GALT1Q9NS00 363 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 GMIPQ9P107 970 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 TRPC5Q9UL62 973 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-208ENST00000469585 RAXQ9Y2V3 346 aa8.41□□□□□ -1.06
PTCD3-208ENST00000469585 TOPAZ1Q8N9V7 1692 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 USP32Q8NFA0 1604 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 USP6P35125 1406 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 UPK3BL1B0FP48 263 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 CHURC1-FNTBB4DL54 471 aa8.4□□□□□ -1.06
PTCD3-208ENST00000469585 UPK3BL2E5RIL1 263 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms