RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 IFT88Q13099 833 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 CCDC96Q2M329 555 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 SPRED3Q2MJR0 410 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 IFT81Q8WYA0 676 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 ZKSCAN4Q969J2 545 aaPredicted RBP13.1□□□□□ -0.31
CPSF3-202ENST00000460593 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.1□□□□□ -0.31
CPSF3-202ENST00000460593 CYP27B1O15528 508 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 KRT86O43790 486 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 DEXIO95424 95 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 TSR1Q2NL82 804 aaKnown RBP13.1□□□□□ -0.31
CPSF3-202ENST00000460593 POTEDQ86YR6 584 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 IFNL3Q8IZI9 196 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 STRBPQ96SI9 672 aaKnown RBP13.1□□□□□ -0.31
CPSF3-202ENST00000460593 CEP131Q9UPN4 1083 aa13.1□□□□□ -0.31
CPSF3-202ENST00000460593 LRRC10BA6NIK2 292 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 PLEKHA8P1O95397 391 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 TATP17735 454 aaPredicted RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 TRIM21P19474 475 aaKnown RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 MCM7P33993 719 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 CABP4P57796 275 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 IL17AQ16552 155 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 MIGA1Q8NAN2 632 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 PROCA1Q8NCQ7 364 aaPredicted RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 WASF1Q92558 559 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 CCDC43Q96MW1 224 aaKnown RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 SLC4A4Q9Y6R1 1079 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 V9GY48 417 aaPredicted RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 RASSF10A6NK89 507 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 PP2D1A8MPX8 630 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 CSB-PGBD3P0DP91 1061 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 PDHBP11177 359 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 VEGFAP15692 232 aaPredicted RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 GPTP24298 496 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 HPDP32754 393 aaPredicted RBP13.09□□□□□ -0.31
CPSF3-202ENST00000460593 MAGEB6Q8N7X4 407 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 SPATA4Q8NEY3 305 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 RWDD2AQ9UIY3 292 aa13.09□□□□□ -0.31
CPSF3-202ENST00000460593 SEMA3EO15041 775 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 MEFVO15553 781 aaPredicted RBP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 CARSP49589 748 aaKnown RBP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 NAA35Q5VZE5 725 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 MFSD6Q6ZSS7 791 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 CEP57Q86XR8 500 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 FANCBQ8NB91 859 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 DONSONQ9NYP3 566 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 NFU1Q9UMS0 254 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 STK36Q9NRP7 1315 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 HSF2BPO75031 334 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 CIAO1O76071 339 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 TMC4Q7Z404 712 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 ZNF654Q8IZM8 581 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 DNAJC7Q99615 494 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 MYO5AQ9Y4I1 1855 aaKnown RBP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 MAP3K15Q6ZN16 1313 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 GOLGA8KD6RF30 607 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 LSP1P33241 339 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 LIFRP42702 1097 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 SF3B2Q13435 895 aaKnown RBP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 HAUS3Q68CZ6 603 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 TYW1BQ6NUM6 668 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 GIMAP7Q8NHV1 300 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 TRIM47Q96LD4 638 aa13.08□□□□□ -0.32
CPSF3-202ENST00000460593 PPANQ9NQ55 473 aaKnown RBP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 RBM12Q9NTZ6 932 aaKnown RBP13.08□□□□□ -0.32
CPSF3-202ENST00000460593 MYH13Q9UKX3 1938 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 MINDY4BA8MYZ0 360 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 RPN1P04843 607 aaKnown RBP13.07□□□□□ -0.32
CPSF3-202ENST00000460593 SETQ01105 290 aaPredicted RBP13.07□□□□□ -0.32
CPSF3-202ENST00000460593 E2F5Q15329 346 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 LDHAL6AQ6ZMR3 332 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 ZNF473Q8WTR7 871 aaKnown RBP13.07□□□□□ -0.32
CPSF3-202ENST00000460593 N4BP2L2Q92802 583 aaPredicted RBP13.07□□□□□ -0.32
CPSF3-202ENST00000460593 SNX12Q9UMY4 172 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 SPATA31A3Q5VYP0 1347 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 MYH10P35580 1976 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 ZNF233A6NK53 670 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 BUB1O43683 1085 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 GLI1P08151 1106 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 USP8P40818 1118 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 NAP1L1P55209 391 aaKnown RBP13.07□□□□□ -0.32
CPSF3-202ENST00000460593 CHRNA2Q15822 529 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 PKN1Q16512 942 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 TTC38Q5R3I4 469 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 AKNAD1Q5T1N1 836 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 PDXDC2PQ6P474 469 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 PIK3AP1Q6ZUJ8 805 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 UBAC1Q9BSL1 405 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 SALL4Q9UJQ4 1053 aa13.07□□□□□ -0.32
CPSF3-202ENST00000460593 LGALS16A8MUM7 142 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 IPO7O95373 1038 aaKnown RBP13.06□□□□□ -0.32
CPSF3-202ENST00000460593 KRT2P35908 639 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 PDE6BP35913 854 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 KRT83P78385 493 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 KIF5AQ12840 1032 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 TRIM14Q14142 442 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 PTPROQ16827 1216 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 LCORLQ8N3X6 602 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CAPN11Q9UMQ6 739 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms