RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 SYT1P21579 422 aa11.96□□□□□ -0.5
USP39-210ENST00000459775 SNAP25P60880 206 aa11.96□□□□□ -0.5
USP39-210ENST00000459775 MYBPC2Q14324 1141 aa11.96□□□□□ -0.5
USP39-210ENST00000459775 GRM4Q14833 912 aa11.96□□□□□ -0.5
USP39-210ENST00000459775 CTCFLQ8NI51 663 aaPredicted RBP11.96□□□□□ -0.5
USP39-210ENST00000459775 ORC3Q9UBD5 711 aaPredicted RBP11.96□□□□□ -0.5
USP39-210ENST00000459775 ZHX2Q9Y6X8 837 aa11.96□□□□□ -0.5
USP39-210ENST00000459775 V9GY48 417 aaPredicted RBP11.96□□□□□ -0.5
USP39-210ENST00000459775 MYH8P13535 1937 aa11.96□□□□□ -0.5
USP39-210ENST00000459775 PALM3A6NDB9 673 aaPredicted RBP11.95□□□□□ -0.5
USP39-210ENST00000459775 PTPRAP18433 802 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 SPP2Q13103 211 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 CCDC96Q2M329 555 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 SLFN13Q68D06 897 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 TMTC3Q6ZXV5 915 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 SCYL3Q8IZE3 742 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 MKL1Q969V6 931 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 SHISA4Q96DD7 197 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 ELP3Q9H9T3 547 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 KLRF2D3W0D1 207 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 PARP1P09874 1014 aaKnown RBP11.95□□□□□ -0.5
USP39-210ENST00000459775 TAL1P17542 331 aaPredicted RBP11.95□□□□□ -0.5
USP39-210ENST00000459775 CCDC178Q5BJE1 867 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 REM2Q8IYK8 340 aaPredicted RBP11.95□□□□□ -0.5
USP39-210ENST00000459775 SNCAIPQ9Y6H5 919 aa11.95□□□□□ -0.5
USP39-210ENST00000459775 GREB1LQ9C091 1923 aaPredicted RBP11.95□□□□□ -0.5
USP39-210ENST00000459775 PPP1R12BO60237 982 aaPredicted RBP11.94□□□□□ -0.5
USP39-210ENST00000459775 MTMR2Q13614 643 aa11.94□□□□□ -0.5
USP39-210ENST00000459775 LARP1BQ659C4 914 aaKnown RBP11.94□□□□□ -0.5
USP39-210ENST00000459775 EGFL6Q8IUX8 553 aa11.94□□□□□ -0.5
USP39-210ENST00000459775 ADAMTS3O15072 1205 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 TPD52L2O43399 206 aaKnown RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 DHX16O60231 1041 aaKnown RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 CALM1P0DP23 149 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 CALM2P0DP24 149 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 CALM3P0DP25 149 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 IFNAR1P17181 557 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 MAP3K9P80192 1104 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 ZNF543Q08ER8 600 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 FAM83BQ5T0W9 1011 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 FERMT3Q86UX7 667 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 HOMER1Q86YM7 354 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 FEZ1Q99689 392 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 LLPHQ9BRT6 129 aaKnown RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 PICK1Q9NRD5 415 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 TSKSQ9UJT2 592 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 TMX2Q9Y320 296 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 NID2Q14112 1375 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 CNTNAP5Q8WYK1 1306 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 VPS37CA5D8V6 355 aaPredicted RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 MYCNP04198 464 aaPredicted RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 SNHG28P0DPA3 235 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 SLC1A4P43007 532 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 SSRP1Q08945 709 aaKnown RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 MKRN3Q13064 507 aaKnown RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 PKN1Q16512 942 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 FAM184AQ8NB25 1140 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 CCDC102AQ96A19 550 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 ARHGEF10LQ9HCE6 1279 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 FBXO28Q9NVF7 368 aa11.93□□□□□ -0.5
USP39-210ENST00000459775 BAZ2BQ9UIF8 2168 aaKnown RBP11.93□□□□□ -0.5
USP39-210ENST00000459775 USP17L10C9JJH3 530 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 FMNL1O95466 1100 aaPredicted RBP11.92□□□□□ -0.5
USP39-210ENST00000459775 KIF5BP33176 963 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 NF2P35240 595 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 NT5C2P49902 561 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 FAM173BQ6P4H8 233 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 GPKOWQ92917 476 aaPredicted RBP eCLIP11.92□□□□□ -0.5
USP39-210ENST00000459775 HOOK2Q96ED9 719 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 OTUD5Q96G74 571 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 EMILIN3Q9NT22 766 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 KCNJ14Q9UNX9 436 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 PCNTO95613 3336 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 CCDC196A0A1B0GTZ2 297 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 TMEM232C9JQI7 657 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 STX6O43752 255 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 RCAN1P53805 252 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 HMGCS2P54868 508 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 PIGSQ96S52 555 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 ALG1Q9BT22 464 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 VCPKMTQ9H867 229 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 RBM28Q9NW13 759 aaKnown RBP11.92□□□□□ -0.5
USP39-210ENST00000459775 CHMP5Q9NZZ3 219 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 MTMR6Q9Y217 621 aa11.92□□□□□ -0.5
USP39-210ENST00000459775 IREB2P48200 963 aaKnown RBP11.91□□□□□ -0.5
USP39-210ENST00000459775 ZNF280CQ8ND82 737 aa11.91□□□□□ -0.5
USP39-210ENST00000459775 GMCL1P1Q8NEA9 526 aa11.91□□□□□ -0.5
USP39-210ENST00000459775 VPS54Q9P1Q0 977 aa11.91□□□□□ -0.5
USP39-210ENST00000459775 CSADQ9Y600 493 aa11.91□□□□□ -0.5
USP39-210ENST00000459775 IRF6O14896 467 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 MARCH6O60337 910 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 BMP3P12645 472 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 GJA5P36382 358 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 HMGN5P82970 282 aaKnown RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 IKQ13123 557 aaPredicted RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 PKN2Q16513 984 aaKnown RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 TYW1BQ6NUM6 668 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 CPLX2Q6PUV4 134 aaKnown RBP11.9□□□□□ -0.5
USP39-210ENST00000459775 ADGRF4Q8IZF3 695 aa11.9□□□□□ -0.5
USP39-210ENST00000459775 SPATA32Q96LK8 384 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms