RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 CNNM3Q8NE01 707 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 IKBKBO14920 756 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 PDE8AO60658 829 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 DNAJC6O75061 913 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 SPATA5Q8NB90 893 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 RETREG1Q9H6L5 497 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 FANCLQ9NW38 375 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 KCNH3Q9ULD8 1083 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 PCDHA5Q9Y5H7 936 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 NRAPQ86VF7 1730 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 TMEM232C9JQI7 657 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 SLU7O95391 586 aaKnown RBP13.35□□□□□ -0.27
SYNE2-207ENST00000458046 UQCRFS1P1P0C7P4 283 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 CYP19A1P11511 503 aaPredicted RBP13.35□□□□□ -0.27
SYNE2-207ENST00000458046 MYL5Q02045 173 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 HOMER1Q86YM7 354 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 LPIN2Q92539 896 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 KCND1Q9NSA2 647 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 GRIN1Q05586 938 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 PUM3Q15397 648 aaKnown RBP13.35□□□□□ -0.27
SYNE2-207ENST00000458046 OLFM4Q6UX06 510 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 LRRN4CLQ8ND94 238 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 ERO1AQ96HE7 468 aa13.35□□□□□ -0.27
SYNE2-207ENST00000458046 RGS20O76081 388 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 PDE4BQ07343 736 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 RASGRF1Q13972 1273 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 FAM196AQ6ZSG2 479 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 SGMS1Q86VZ5 419 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 FHDC1Q9C0D6 1143 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 DDX41Q9UJV9 622 aaKnown RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 SYNRGQ9UMZ2 1314 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 CUTAO60888 179 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 RNASEH2AO75792 299 aaKnown RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 SRGNP10124 158 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 BMP6P22004 513 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 MAP3K12Q12852 859 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 ZKSCAN8Q15776 578 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 MFSD6Q6ZSS7 791 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 DZIP3Q86Y13 1208 aaKnown RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 BANK1Q8NDB2 785 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 UTP14AQ9BVJ6 771 aaKnown RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 SEC31BQ9NQW1 1179 aa13.34□□□□□ -0.27
SYNE2-207ENST00000458046 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.34□□□□□ -0.27
SYNE2-207ENST00000458046 GSG1L2A8MUP6 293 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 KIF2AO00139 706 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-207ENST00000458046 TOB1P50616 345 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-207ENST00000458046 UTP14CQ5TAP6 766 aaKnown RBP13.33□□□□□ -0.28
SYNE2-207ENST00000458046 FBXO38Q6PIJ6 1188 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 NOSTRINQ8IVI9 506 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 DIS3L2Q8IYB7 885 aaKnown RBP13.33□□□□□ -0.28
SYNE2-207ENST00000458046 MIGA1Q8NAN2 632 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 ZNF397Q8NF99 534 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-207ENST00000458046 A0A0G2JS52 829 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 FMNL1O95466 1100 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-207ENST00000458046 NDUFV2P19404 249 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 FGFR2P21802 821 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 LIFRP42702 1097 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 PSMD2Q13200 908 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 TOMM20Q15388 145 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 GPR162Q16538 588 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 ERCC6LQ2NKX8 1250 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 AKNAD1Q5T1N1 836 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 RNF217Q8TC41 542 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 NUP133Q8WUM0 1156 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 BTG4Q9NY30 223 aa13.33□□□□□ -0.28
SYNE2-207ENST00000458046 AKAP11Q9UKA4 1901 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 COL6A1P12109 1028 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 SSR1P43307 286 aaKnown RBP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 BCAMP50895 628 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 NR5A1Q13285 461 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 ALX1Q15699 326 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 ZNF827Q17R98 1081 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 TBC1D10BQ4KMP7 808 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 CCDC92Q53HC0 331 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 GRAMD1CQ8IYS0 662 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 LCORLQ8N3X6 602 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 GTPBP4Q9BZE4 634 aaKnown RBP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 DNAI1Q9UI46 699 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 SLC4A4Q9Y6R1 1079 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 FAM237AA0A1B0GTK4 181 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 POLR2DO15514 142 aaKnown RBP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 TOP1P11387 765 aaKnown RBP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 SLC5A1P13866 664 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 ZBED6P86452 979 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 SAFBQ15424 915 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNE2-207ENST00000458046 MPHOSPH8Q99549 860 aa13.32□□□□□ -0.28
SYNE2-207ENST00000458046 PAPPAQ13219 1627 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 C4AP0C0L4 1744 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 C4BP0C0L5 1744 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 MMP1P03956 469 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 RBP3P10745 1247 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 IFNAR1P17181 557 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 RTN1Q16799 776 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 FAM161BQ96MY7 647 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 PPCSQ9HAB8 311 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 PTPRHQ9HD43 1115 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 SERTAD1Q9UHV2 236 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 MROH5Q6ZUA9 1318 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 C10orf71Q711Q0 1435 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms