RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-208ENST00000457745 MAP3K14Q99558 947 aa10.13□□□□□ -0.79
RIF1-208ENST00000457745 TRIM34Q9BYJ4 488 aa10.13□□□□□ -0.79
RIF1-208ENST00000457745 KANSL2Q9H9L4 492 aa10.13□□□□□ -0.79
RIF1-208ENST00000457745 ZNF287Q9HBT7 754 aa10.13□□□□□ -0.79
RIF1-208ENST00000457745 RBM28Q9NW13 759 aaKnown RBP10.13□□□□□ -0.79
RIF1-208ENST00000457745 ZNF112Q9UJU3 913 aa10.13□□□□□ -0.79
RIF1-208ENST00000457745 UTRNP46939 3433 aa10.13□□□□□ -0.79
RIF1-208ENST00000457745 BTBD18B2RXH4 712 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 F5H6K3 240 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 STXBP3O00186 592 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 TRAF5O00463 557 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 FIBPO43427 364 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 DHX16O60231 1041 aaKnown RBP10.12□□□□□ -0.79
RIF1-208ENST00000457745 USP2O75604 605 aaPredicted RBP10.12□□□□□ -0.79
RIF1-208ENST00000457745 PARP1P09874 1014 aaKnown RBP10.12□□□□□ -0.79
RIF1-208ENST00000457745 TNNI2P48788 182 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 TOB1P50616 345 aaPredicted RBP10.12□□□□□ -0.79
RIF1-208ENST00000457745 KLRC3Q07444 240 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 PFKFB3Q16875 520 aaPredicted RBP10.12□□□□□ -0.79
RIF1-208ENST00000457745 CCDC96Q2M329 555 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 USP48Q86UV5 1035 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 APOBEC3FQ8IUX4 373 aaKnown RBP10.12□□□□□ -0.79
RIF1-208ENST00000457745 HS6ST3Q8IZP7 471 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 RASGRP4Q8TDF6 673 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 PHF20Q9BVI0 1012 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 RIOX1Q9H6W3 641 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 JMJD4Q9H9V9 463 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 VAT1LQ9HCJ6 419 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 MRVI1Q9Y6F6 885 aa10.12□□□□□ -0.79
RIF1-208ENST00000457745 PITPNM2Q9BZ72 1349 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 H3BQV1 296 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 EDIL3O43854 480 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 GRIN3BO60391 1043 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 PRPF40AO75400 957 aaKnown RBP10.11□□□□□ -0.79
RIF1-208ENST00000457745 CDKL5O76039 1030 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 DEXIO95424 95 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 MMP1P03956 469 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 SCG2P13521 617 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 PDCP20941 246 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 LMOD1P29536 600 aaPredicted RBP10.11□□□□□ -0.79
RIF1-208ENST00000457745 NT5C2P49902 561 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 MMP14P50281 582 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 TNFAIP1Q13829 316 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 TPRNQ4KMQ1 711 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 CCDC178Q5BJE1 867 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 IFFO2Q5TF58 517 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.11□□□□□ -0.79
RIF1-208ENST00000457745 HOMER1Q86YM7 354 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 DIS3L2Q8IYB7 885 aaKnown RBP10.11□□□□□ -0.79
RIF1-208ENST00000457745 COA7Q96BR5 231 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 MTMR8Q96EF0 704 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 CDCA5Q96FF9 252 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 PGBD1Q96JS3 809 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 P2RX7Q99572 595 aaKnown RBP10.11□□□□□ -0.79
RIF1-208ENST00000457745 SPZ1Q9BXG8 430 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 NMRK2Q9NPI5 230 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 FBXO28Q9NVF7 368 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 RBM27Q9P2N5 1060 aaKnown RBP10.11□□□□□ -0.79
RIF1-208ENST00000457745 TMX2Q9Y320 296 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 CLIC4Q9Y696 253 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 SNCAIPQ9Y6H5 919 aa10.11□□□□□ -0.79
RIF1-208ENST00000457745 CCDC196A0A1B0GTZ2 297 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 M0R2N6 131 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 RAD21O60216 631 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 CEBPZQ03701 1054 aaKnown RBP10.1□□□□□ -0.79
RIF1-208ENST00000457745 EAPPQ56P03 285 aaPredicted RBP10.1□□□□□ -0.79
RIF1-208ENST00000457745 FAM83BQ5T0W9 1011 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 MAP1SQ66K74 1059 aaPredicted RBP10.1□□□□□ -0.79
RIF1-208ENST00000457745 ADGRF4Q8IZF3 695 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 TMEM87AQ8NBN3 555 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 GMCL1P1Q8NEA9 526 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.1□□□□□ -0.79
RIF1-208ENST00000457745 KLRG1Q96E93 195 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 CLMNQ96JQ2 1002 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 WRNIP1Q96S55 665 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 ZNF341Q9BYN7 854 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 EMILIN3Q9NT22 766 aa10.1□□□□□ -0.79
RIF1-208ENST00000457745 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.1□□□□□ -0.79
RIF1-208ENST00000457745 PTPRAP18433 802 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 NCLP19338 710 aaKnown RBP10.09□□□□□ -0.79
RIF1-208ENST00000457745 U2AF2P26368 475 aaKnown RBP eCLIP10.09□□□□□ -0.79
RIF1-208ENST00000457745 KIF5BP33176 963 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 QRICH1Q2TAL8 776 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 ASPRV1Q53RT3 343 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 MYSM1Q5VVJ2 828 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 CPLX2Q6PUV4 134 aaKnown RBP10.09□□□□□ -0.79
RIF1-208ENST00000457745 POTEEQ6S8J3 1075 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 KRT26Q7Z3Y9 468 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 HEATR3Q7Z4Q2 680 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 TRIM22Q8IYM9 498 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 SCYL3Q8IZE3 742 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 DCAF4Q8WV16 495 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 LEO1Q8WVC0 666 aaPredicted RBP10.09□□□□□ -0.79
RIF1-208ENST00000457745 GMCL1Q96IK5 515 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 WNK4Q96J92 1243 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 GBP4Q96PP9 640 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 VCPKMTQ9H867 229 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 RRAGCQ9HB90 399 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
RIF1-208ENST00000457745 TMEM260Q9NX78 707 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms