RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 TBC1D32Q96NH3 1257 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 KIAA1683Q9H0B3 1180 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 IL17RBQ9NRM6 502 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 STX8Q9UNK0 236 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 USTQ9Y2C2 406 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 RBBP6Q7Z6E9 1792 aaKnown RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 BAZ2BQ9UIF8 2168 aaKnown RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 A0A0G2JLL6 359 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 POTEFA5A3E0 1075 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 FAM155AB1AL88 458 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 C19orf81C9J6K1 198 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 USP17L10C9JJH3 530 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 PRC1O43663 620 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 TOP1P11387 765 aaKnown RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 EEF2P13639 858 aaKnown RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 GJA5P36382 358 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 GTF2A2P52657 109 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 BACE1P56817 501 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 ATP2B2Q01814 1243 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 SPP2Q13103 211 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CYP4F22Q6NT55 531 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 DHX32Q7L7V1 743 aaKnown RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 PRRT2Q7Z6L0 340 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 ENAHQ8N8S7 591 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 NKX2-3Q8TAU0 364 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 ZKSCAN3Q9BRR0 538 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 ADAM33Q9BZ11 813 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 TMX2Q9Y320 296 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CYP46A1Q9Y6A2 500 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 MGAMO43451 1857 aa10.27□□□□□ -0.76
SYNE1-214ENST00000454018 MANSC4A6NHS7 340 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-214ENST00000454018 DDX11L8A8MPP1 907 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 IFIT3O14879 490 aaKnown RBP10.27□□□□□ -0.77
SYNE1-214ENST00000454018 CETPP11597 493 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 RPS6KB1P23443 525 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 WTAPQ15007 396 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 SEC23AQ15436 765 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 IFIT1BQ5T764 474 aaKnown RBP10.27□□□□□ -0.77
SYNE1-214ENST00000454018 RCSD1Q6JBY9 416 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 RUFY3Q7L099 469 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 ZNF454Q8N9F8 522 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 GMCL1P1Q8NEA9 526 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 ACER1Q8TDN7 264 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 ANKS1AQ92625 1134 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 LPAR1Q92633 364 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 MKL1Q969V6 931 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 C12orf42Q96LP6 360 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 ZSWIM6Q9HCJ5 1215 aa10.27□□□□□ -0.77
SYNE1-214ENST00000454018 A0A1W2PRG0 241 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 SH2B2O14492 632 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-214ENST00000454018 LIFRP42702 1097 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 HMGCS2P54868 508 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 EXOSC10Q01780 885 aaKnown RBP10.26□□□□□ -0.77
SYNE1-214ENST00000454018 SREBF2Q12772 1141 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 GRM1Q13255 1194 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 TMEM67Q5HYA8 995 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 USP17L2Q6R6M4 530 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 FASTKD5Q7L8L6 764 aaKnown RBP10.26□□□□□ -0.77
SYNE1-214ENST00000454018 CHST3Q7LGC8 479 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 SIAH1Q8IUQ4 282 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 LRRC47Q8N1G4 583 aaKnown RBP10.26□□□□□ -0.77
SYNE1-214ENST00000454018 FBXL16Q8N461 479 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 UPF3BQ9BZI7 483 aaKnown RBP10.26□□□□□ -0.77
SYNE1-214ENST00000454018 VCPKMTQ9H867 229 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 KAT14Q9H8E8 782 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 TMOD4Q9NZQ9 345 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 CLIP2Q9UDT6 1046 aa10.26□□□□□ -0.77
SYNE1-214ENST00000454018 WDR33Q9C0J8 1336 aaKnown RBP10.26□□□□□ -0.77
SYNE1-214ENST00000454018 CCL15-CCL14A0A0B4J2E2 113 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 GPR37L1O60883 481 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 INHBEP58166 350 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 HTRA3P83110 453 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 FGD1P98174 961 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 COL9A3Q14050 684 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-214ENST00000454018 ZYXQ15942 572 aaKnown RBP10.25□□□□□ -0.77
SYNE1-214ENST00000454018 CCL15Q16663 113 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 SGMS1Q86VZ5 419 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 TMTC2Q8N394 836 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 PNMA1Q8ND90 353 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 IGDCC4Q8TDY8 1250 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 TMEM47Q9BQJ4 181 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 AGXT2Q9BYV1 514 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 LY9Q9HBG7 655 aa10.25□□□□□ -0.77
SYNE1-214ENST00000454018 WDR46O15213 610 aaKnown RBP10.24□□□□□ -0.77
SYNE1-214ENST00000454018 NDUFB10O96000 172 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 CPA1P15085 419 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 VCAM1P19320 739 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 MAP2K2P36507 400 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 VEGFBP49765 207 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 RABEP1Q15276 862 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 GADL1Q6ZQY3 521 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 GMCL1Q96IK5 515 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 TCEANC2Q96MN5 208 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 KIF2CQ99661 725 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 PPP1R12CQ9BZL4 782 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 ZCCHC17Q9NP64 241 aaKnown RBP10.24□□□□□ -0.77
SYNE1-214ENST00000454018 AGTPBP1Q9UPW5 1226 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 SLC45A1Q9Y2W3 748 aa10.24□□□□□ -0.77
SYNE1-214ENST00000454018 SMCHD1A6NHR9 2005 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 CCDC69A6NI79 296 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms