RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 C21orf2O43822 256 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 ZBTB7AO95365 584 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 NFIAQ12857 509 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 USP49Q70CQ1 688 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 CAMKK2Q96RR4 588 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 SEC63Q9UGP8 760 aaKnown RBP16.07■□□□□ 0.16
LIMD1-202ENST00000440097 PCDHAC2Q9Y5I4 1007 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 CDK5RAP2Q96SN8 1893 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 CCDC194A0A1B0GVG4 234 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 AKR1B1P15121 316 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 NLRP12P59046 1061 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 PTGDRQ13258 359 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 APOBEC3HQ6NTF7 200 aaKnown RBP16.07■□□□□ 0.16
LIMD1-202ENST00000440097 HHIPL2Q6UWX4 724 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 OSBPL5Q9H0X9 879 aaPredicted RBP16.07■□□□□ 0.16
LIMD1-202ENST00000440097 FRMPD2Q68DX3 1309 aaPredicted RBP16.07■□□□□ 0.16
LIMD1-202ENST00000440097 PSDA5PKW4 1024 aaPredicted RBP16.06■□□□□ 0.16
LIMD1-202ENST00000440097 BMP15O95972 392 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 ERCC6LQ2NKX8 1250 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 STRIP1Q5VSL9 837 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 WWC2Q6AWC2 1192 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 METTL16Q86W50 562 aaKnown RBP16.06■□□□□ 0.16
LIMD1-202ENST00000440097 CCDC148Q8NFR7 591 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 UBA5Q9GZZ9 404 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 CALCOCO1Q9P1Z2 691 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 PALM3A6NDB9 673 aaPredicted RBP16.06■□□□□ 0.16
LIMD1-202ENST00000440097 FOXN1O15353 648 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 NAPAP54920 295 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 LRRN4CLQ8ND94 238 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 DHX58Q96C10 678 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 EPSTI1Q96J88 318 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 LZTS2Q9BRK4 669 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 TRIM34Q9BYJ4 488 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 SERTAD1Q9UHV2 236 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 PCDHA4Q9UN74 947 aa16.06■□□□□ 0.16
LIMD1-202ENST00000440097 DDX60LQ5H9U9 1706 aaKnown RBP16.06■□□□□ 0.16
LIMD1-202ENST00000440097 USP17L5A8MUK1 530 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 PPIP5K2O43314 1243 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 SLURP2P0DP57 97 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 H2AFXP16104 143 aaPredicted RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 TPM4P67936 248 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 BMS1Q14692 1282 aaKnown RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 TYW1BQ6NUM6 668 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 RRP36Q96EU6 259 aaKnown RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 ATF5Q9Y2D1 282 aaPredicted RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 FAM196BA6NMK8 535 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 FOXP4Q8IVH2 680 aaPredicted RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 GRAMD1CQ8IYS0 662 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 ZNF579Q8NAF0 562 aaKnown RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 TNFRSF25Q93038 417 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 MTMR4Q9NYA4 1195 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 PCDHA5Q9Y5H7 936 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 SLX4Q8IY92 1834 aa16.05■□□□□ 0.16
LIMD1-202ENST00000440097 TNS1Q9HBL0 1735 aaKnown RBP16.05■□□□□ 0.16
LIMD1-202ENST00000440097 FAM237AA0A1B0GTK4 181 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 KIF2AO00139 706 aaPredicted RBP16.04■□□□□ 0.16
LIMD1-202ENST00000440097 POSTNQ15063 836 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 SLC35G1Q2M3R5 365 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 SH3GLB2Q9NR46 395 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 KCND1Q9NSA2 647 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 DACT2Q5SW24 774 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 SOGA3Q5TF21 947 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 ZFPM1Q8IX07 1006 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 SYMPKQ92797 1274 aaKnown RBP16.04■□□□□ 0.16
LIMD1-202ENST00000440097 FERMT2Q96AC1 680 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 CCDC34Q96HJ3 373 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 BARHL2Q9NY43 387 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 FHOD1Q9Y613 1164 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 FAM193AP78312 1265 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 GABPAQ06546 454 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 ZDHHC15Q96MV8 337 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 L2HGDHQ9H9P8 463 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 GPCPD1Q9NPB8 672 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 SWAP70Q9UH65 585 aa16.04■□□□□ 0.16
LIMD1-202ENST00000440097 CYP2C19P33261 490 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 AFMP43652 599 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 CLCN6P51797 869 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 E4F1Q66K89 784 aaPredicted RBP16.03■□□□□ 0.16
LIMD1-202ENST00000440097 SYT10Q6XYQ8 523 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 PIGSQ96S52 555 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 SMC2O95347 1197 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 TTLL1O95922 423 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 BAG6P46379 1132 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 TRAPPC10P48553 1259 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 GSDMDP57764 484 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 INF2Q27J81 1249 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 SMARCE1Q969G3 411 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 PPP1R13BQ96KQ4 1090 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 SPZ1Q9BXG8 430 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 TUBE1Q9UJT0 475 aa16.03■□□□□ 0.16
LIMD1-202ENST00000440097 STXBP3O00186 592 aa16.02■□□□□ 0.16
LIMD1-202ENST00000440097 PDHBP11177 359 aa16.02■□□□□ 0.16
LIMD1-202ENST00000440097 LMOD1P29536 600 aaPredicted RBP16.02■□□□□ 0.16
LIMD1-202ENST00000440097 CREBRFQ8IUR6 639 aa16.02■□□□□ 0.16
LIMD1-202ENST00000440097 CCDC12Q8WUD4 166 aaPredicted RBP16.02■□□□□ 0.16
LIMD1-202ENST00000440097 PRR29P0C7W0 189 aa16.02■□□□□ 0.15
LIMD1-202ENST00000440097 CAPN2P17655 700 aa16.02■□□□□ 0.15
LIMD1-202ENST00000440097 ATP2C1P98194 919 aaPredicted RBP16.02■□□□□ 0.15
LIMD1-202ENST00000440097 CCDC96Q2M329 555 aa16.02■□□□□ 0.15
LIMD1-202ENST00000440097 RASSF8Q8NHQ8 419 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms