RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 PYM1Q9BRP8 204 aaKnown RBP18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 IRX2Q9BZI1 471 aaPredicted RBP18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 LIMA1Q9UHB6 759 aaKnown RBP18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 SRBD1Q8N5C6 995 aaKnown RBP18.54■□□□□ 0.56
CLCNKA-203ENST00000439316 IQUBQ8NA54 791 aa18.54■□□□□ 0.56
CLCNKA-203ENST00000439316 PARD6BQ9BYG5 372 aa18.54■□□□□ 0.56
CLCNKA-203ENST00000439316 QSER1Q2KHR3 1735 aa18.54■□□□□ 0.56
CLCNKA-203ENST00000439316 GTPBP6O43824 516 aaPredicted RBP18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 KIF5CO60282 957 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 CASP14P31944 242 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 CYP2C19P33261 490 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 JAKMIP3Q5VZ66 844 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 FBXO33Q7Z6M2 555 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 CPLX3Q8WVH0 158 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 LZTFL1Q9NQ48 299 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 RWDD2AQ9UIY3 292 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 MYH13Q9UKX3 1938 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 A0A0U1RQJ8 604 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 CCDC66A2RUB6 948 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 LRRC10BA6NIK2 292 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 BBOX1O75936 387 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 SCG2P13521 617 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 TXLNAP40222 546 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 FXR1P51114 621 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 KRT31Q15323 416 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 TXNRD3Q86VQ6 643 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 CTCFLQ8NI51 663 aaPredicted RBP18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 ATRIPQ8WXE1 791 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 CRAMP1Q96RY5 1269 aa18.53■□□□□ 0.56
CLCNKA-203ENST00000439316 KIAA1551Q9HCM1 1747 aa18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 USP17L12C9JPN9 530 aa18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 USP17L21D6R901 530 aa18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 SRGAP1Q7Z6B7 1085 aa18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 MTRQ99707 1265 aa18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 PDGFDQ9GZP0 370 aaPredicted RBP18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 ARFGAP3Q9NP61 516 aa18.52■□□□□ 0.56
CLCNKA-203ENST00000439316 MAST2Q6P0Q8 1798 aa18.52■□□□□ 0.55
CLCNKA-203ENST00000439316 SRGNP10124 158 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 HIBADHP31937 336 aaKnown RBP18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 SPAG1Q07617 926 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 TUBB2AQ13885 445 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 IL17AQ16552 155 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 PFKFB3Q16875 520 aaPredicted RBP18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 RRAGBQ5VZM2 374 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 PIK3AP1Q6ZUJ8 805 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 STAMQ92783 540 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 TUBB2BQ9BVA1 445 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 BLZF1Q9H2G9 400 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 CDC23Q9UJX2 597 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 TTF2Q9UNY4 1162 aaKnown RBP18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 LEMD3Q9Y2U8 911 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 CHMP4BP1P59074 171 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 GPSM2P81274 684 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 PAK1Q13153 545 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 TMTC1Q8IUR5 882 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 PDS5AQ29RF7 1337 aaKnown RBP18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 IRS2Q9Y4H2 1338 aa18.51■□□□□ 0.55
CLCNKA-203ENST00000439316 CCDC151A5D8V7 595 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 PDE6BP35913 854 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 CCT6AP40227 531 aaKnown RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 COPB1P53618 953 aaKnown RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 NLRP5P59047 1200 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 TRIM14Q14142 442 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 BRD3Q15059 726 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 CEP112Q8N8E3 955 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 NSUN4Q96CB9 384 aaKnown RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 FUT8Q9BYC5 575 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 NMT2O60551 498 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 ERVK-24P63145 666 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 EVX2Q03828 476 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 ZNF658Q5TYW1 1059 aaPredicted RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 ARL6IP4Q66PJ3 421 aaKnown RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 DCP1AQ9NPI6 582 aaPredicted RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 ABHD10Q9NUJ1 306 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 RMND1Q9NWS8 449 aa18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.5■□□□□ 0.55
CLCNKA-203ENST00000439316 COL11A2P13942 1736 aaPredicted RBP18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 N4BP3O15049 544 aa18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 NPR1P16066 1061 aa18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 MCM7P33993 719 aa18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 ZNF569Q5MCW4 686 aa18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 ACRBPQ8NEB7 543 aa18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 NELFBQ8WX92 580 aa18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 GPR101Q96P66 508 aaPredicted RBP18.49■□□□□ 0.55
CLCNKA-203ENST00000439316 MYH8P13535 1937 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 ADAMTS3O15072 1205 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 COBLO75128 1261 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 OAS2P29728 719 aaKnown RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 LONP1P36776 959 aaKnown RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 SMC1AQ14683 1233 aaKnown RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 TCP11X2Q5H9J9 407 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 C4orf32Q8N8J7 132 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 CRNKL1Q9BZJ0 848 aaKnown RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 CTAGE9A4FU28 777 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 KCNJ18B7U540 433 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 POTEB2H3BUK9 544 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 PPEF1O14829 653 aaPredicted RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 RPN1P04843 607 aaKnown RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 MECOMQ03112 1051 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 KCNJ12Q14500 433 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms