RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 RAB21Q9UL25 225 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 LAMB1P07942 1786 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 COL4A1P02462 1669 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 A0A1W2PQC6 194 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 LAD1O00515 517 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 SASH3O75995 380 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 EEF1GP26641 437 aaKnown RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 USP5P45974 858 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 GPS2Q13227 327 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 STIM1Q13586 685 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 LONRF2Q1L5Z9 754 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 FAM47AQ5JRC9 791 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 DTHD1Q6ZMT9 781 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 NOC3LQ8WTT2 800 aaKnown RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 GBP3Q9H0R5 595 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 MYH14Q7Z406 1995 aaKnown RBP12.72□□□□□ -0.37
USP4-205ENST00000431357 OAS2P29728 719 aaKnown RBP12.72□□□□□ -0.37
USP4-205ENST00000431357 KRT9P35527 623 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 RPS8P62241 208 aaKnown RBP12.72□□□□□ -0.37
USP4-205ENST00000431357 ERVK-24P63145 666 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 C3orf67Q6ZVT6 689 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 ADSSL1Q8N142 457 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 SLC35F6Q8N357 371 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 MARCH10Q8NA82 808 aaPredicted RBP12.72□□□□□ -0.37
USP4-205ENST00000431357 DAGLBQ8NCG7 672 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 CCDC148Q8NFR7 591 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 CELF1Q92879 486 aaKnown RBP12.72□□□□□ -0.37
USP4-205ENST00000431357 NYXQ9GZU5 481 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 DISC1Q9NRI5 854 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 TAB2Q9NYJ8 693 aa12.72□□□□□ -0.37
USP4-205ENST00000431357 MAST2Q6P0Q8 1798 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 MAP2K7O14733 419 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 NMT2O60551 498 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 RCSD1Q6JBY9 416 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 TXLNBQ8N3L3 684 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 CUEDC2Q9H467 287 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 THAP9Q9H5L6 903 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 MAGEF1Q9HAY2 307 aa12.71□□□□□ -0.37
USP4-205ENST00000431357 CCDC194A0A1B0GVG4 234 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 CTAGE15A4D2H0 777 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 PARP1P09874 1014 aaKnown RBP12.71□□□□□ -0.38
USP4-205ENST00000431357 CTAGE8P0CG41 777 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 PRCPP42785 496 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 UBXN1Q04323 297 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 GRM4Q14833 912 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 TSR1Q2NL82 804 aaKnown RBP12.71□□□□□ -0.38
USP4-205ENST00000431357 CTAGE6Q86UF2 777 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 CTAGE4Q8IX94 777 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 ACRBPQ8NEB7 543 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 OR8K1Q8NGG5 319 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 CCSER1Q9C0I3 900 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 ANKZF1Q9H8Y5 726 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 ZNF831Q5JPB2 1677 aa12.71□□□□□ -0.38
USP4-205ENST00000431357 WTIPA6NIX2 430 aaPredicted RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 LGALS16A8MUM7 142 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 POLR3GO15318 223 aaPredicted RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 PRPHP41219 470 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 PPP1R2P41236 205 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 ARHGAP25P42331 645 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 HDXQ7Z353 690 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 DHX37Q8IY37 1157 aaKnown RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 MB21D1Q8N884 522 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 CCDC47Q96A33 483 aaKnown RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 NLRP3Q96P20 1036 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 LZTS2Q9BRK4 669 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 HAUS4Q9H6D7 363 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 TCP11L1Q9NUJ3 509 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 PUF60Q9UHX1 559 aaKnown RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 EPN1Q9Y6I3 576 aaPredicted RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 COL5A3P25940 1745 aaPredicted RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 KIAA1551Q9HCM1 1747 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 M0R2N6 131 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 PSMA7O14818 248 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 RHOBTB3O94955 611 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 CYP2D6P10635 497 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 UBA7P41226 1012 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 IRX5P78411 483 aaPredicted RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 TFAP4Q01664 338 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 C12orf60Q5U649 245 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 ZNF662Q6ZS27 426 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 AMOTL1Q8IY63 956 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 PNMA1Q8ND90 353 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 MCM9Q9NXL9 1143 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 MAGEC2Q9UBF1 373 aaPredicted RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 GDAQ9Y2T3 454 aa12.7□□□□□ -0.38
USP4-205ENST00000431357 LUC7L2Q9Y383 392 aaKnown RBP12.7□□□□□ -0.38
USP4-205ENST00000431357 ROBO1Q9Y6N7 1651 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 AHDC1Q5TGY3 1603 aaPredicted RBP12.69□□□□□ -0.38
USP4-205ENST00000431357 A0A0U1RQJ8 604 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 EIF3JO75822 258 aaKnown RBP12.69□□□□□ -0.38
USP4-205ENST00000431357 NDUFA10O95299 355 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 DNM2P50570 870 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 BEND6Q5SZJ8 279 aaPredicted RBP12.69□□□□□ -0.38
USP4-205ENST00000431357 RASSF8Q8NHQ8 419 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 ATRIPQ8WXE1 791 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 DHTKD1Q96HY7 919 aaPredicted RBP12.69□□□□□ -0.38
USP4-205ENST00000431357 AK8Q96MA6 479 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 DNAJC7Q99615 494 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 NUP58Q9BVL2 599 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 ZSWIM4Q9H7M6 989 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms