RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 SUSD2Q9UGT4 822 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 ATP8A1Q9Y2Q0 1164 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 NPHP4O75161 1426 aaPredicted RBP5.54□□□□□ -1.52
HMGB3-203ENST00000430118 SAMD9LQ8IVG5 1584 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 VWDEQ8N2E2 1590 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 UGGT1Q9NYU2 1555 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 SPAG9O60271 1321 aaKnown RBP5.53□□□□□ -1.52
HMGB3-203ENST00000430118 MED14O60244 1454 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 A2MP01023 1474 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 LRRC9Q6ZRR7 1453 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 A0A087WZG4 1122 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 TRBV23-1A0A0A0MS06 115 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 DLL1O00548 723 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 NPTXRO95502 500 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 DLGAP3O95886 979 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 CAPNS1P04632 268 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 SLURP2P0DP57 97 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 CPEP16870 476 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 CNGA1P29973 690 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 GBP1P32455 592 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 DUOXA2Q1HG44 320 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 POMZP3Q6PJE2 187 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 PPFIBP1Q86W92 1011 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 THEMISQ8N1K5 641 aaPredicted RBP5.53□□□□□ -1.52
HMGB3-203ENST00000430118 PPM1KQ8N3J5 372 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 GALNT6Q8NCL4 622 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 RCC1LQ96I51 464 aaKnown RBP5.53□□□□□ -1.52
HMGB3-203ENST00000430118 EXOC2Q96KP1 924 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 DISC1Q9NRI5 854 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 WHRNQ9P202 907 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 CDC42BPBQ9Y5S2 1711 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 TNRQ92752 1358 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 KDM5DQ9BY66 1539 aa5.53□□□□□ -1.52
HMGB3-203ENST00000430118 SETD1AO15047 1707 aaKnown RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 INO80Q9ULG1 1556 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 SPDYE3A6NKU9 549 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 GSG1L2A8MUP6 293 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PDE8AO60658 829 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 DEAF1O75398 565 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PPM1BO75688 479 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 LRIG2O94898 1065 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 ADAMTS2O95450 1211 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PARNO95453 639 aaKnown RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 EPHX1P07099 455 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 BCRP11274 1271 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 ADH5P11766 374 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 MYCLP1P12525 358 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 POLR2BP30876 1174 aaKnown RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 RAC1P63000 192 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PPP2R2AP63151 447 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 SLBPQ14493 270 aaKnown RBP eCLIP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 AKAP4Q5JQC9 854 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 RNFT1Q5M7Z0 435 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 NUTM2GQ5VZR2 741 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 GGT6Q6P531 493 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 C1orf229Q6ZS94 237 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 RNF180Q86T96 592 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 FERMT3Q86UX7 667 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 DMRTC2Q8IXT2 367 aaPredicted RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 AHI1Q8N157 1196 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PRPF38AQ8NAV1 312 aaKnown RBP5.52□□□□□ -1.53
HMGB3-203ENST00000430118 RELTQ969Z4 430 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 FOXQ1Q9C009 403 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 CHPF2Q9P2E5 772 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PPP1R9AQ9ULJ8 1098 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 CSADQ9Y600 493 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 ADGBQ8N7X0 1667 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 LRRC7Q96NW7 1537 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 SYCP2Q9BX26 1530 aa5.52□□□□□ -1.53
HMGB3-203ENST00000430118 PZPP20742 1482 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 PIK3R2O00459 728 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 CBFA2T2O43439 604 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 EFCAB14O75071 495 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 TIAF1O95411 115 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 POU3F2P20265 443 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 DGKGP49619 791 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 SOX4Q06945 474 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 CT47A1Q5JQC4 288 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 ANKRD34AQ69YU3 496 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 ZNF227Q86WZ6 799 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 CCDC144CPQ8IYA2 1237 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 FMR1NBQ8N0W7 255 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 ZNF513Q8N8E2 541 aaPredicted RBP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 BVESQ8NE79 360 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 CCDC140Q96MF4 163 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 ASPNQ9BXN1 380 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 FBRSQ9HAH7 460 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 PIDD1Q9HB75 910 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 GEMIN8Q9NWZ8 242 aaKnown RBP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 KCNK4Q9NYG8 393 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 LRP2BPQ9P2M1 347 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.51□□□□□ -1.53
HMGB3-203ENST00000430118 ALKQ9UM73 1620 aa5.51□□□□□ -1.53
HMGB3-203ENST00000430118 FAM135BQ49AJ0 1406 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 FAM86C2PA6NEL3 165 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 C9IYK1 514 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 NOP56O00567 594 aaKnown RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 IRS4O14654 1257 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 DDX3YO15523 660 aaKnown RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms