RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NEMFO60524 1076 aa14.52□□□□□ -0.08
PTCH1-207ENST00000429896 VEGFAP15692 232 aaPredicted RBP14.52□□□□□ -0.08
PTCH1-207ENST00000429896 FGFR2P21802 821 aa14.52□□□□□ -0.08
PTCH1-207ENST00000429896 SCRN1Q12765 414 aa14.52□□□□□ -0.08
PTCH1-207ENST00000429896 TXLNBQ8N3L3 684 aa14.52□□□□□ -0.09
PTCH1-207ENST00000429896 LRP6O75581 1613 aa14.52□□□□□ -0.09
PTCH1-207ENST00000429896 MACROD2A1Z1Q3 448 aa14.52□□□□□ -0.09
PTCH1-207ENST00000429896 DESP17661 470 aa14.52□□□□□ -0.09
PTCH1-207ENST00000429896 CTNNBL1Q8WYA6 563 aaPredicted RBP14.52□□□□□ -0.09
PTCH1-207ENST00000429896 UIMC1Q96RL1 719 aa14.52□□□□□ -0.09
PTCH1-207ENST00000429896 DDNO94850 711 aaPredicted RBP14.51□□□□□ -0.09
PTCH1-207ENST00000429896 TRIM47Q96LD4 638 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 TMEM47Q9BQJ4 181 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 SHPRHQ149N8 1683 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 DNM2P50570 870 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 ISM2Q6H9L7 571 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 NEK8Q86SG6 692 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 SNX29Q8TEQ0 813 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 CEP95Q96GE4 821 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 M0QZ92 97 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 PLA2G4DQ86XP0 818 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 IFT74Q96LB3 600 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 PNMA6FA0A0J9YX94 578 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 CCND2P30279 289 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 PRAMEF18Q5VWM3 479 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 SLFN12Q8IYM2 578 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 KRT13P13646 458 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 RCSD1Q6JBY9 416 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 TMEM39BQ9GZU3 492 aa14.51□□□□□ -0.09
PTCH1-207ENST00000429896 SMTNP53814 917 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 ORC4O43929 436 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 PRKCSHP14314 528 aaPredicted RBP14.5□□□□□ -0.09
PTCH1-207ENST00000429896 INF2Q27J81 1249 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 MMRN2Q9H8L6 949 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 PCDHA4Q9UN74 947 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 CCP110O43303 1012 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 AKR1B1P15121 316 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 HUNKP57058 714 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 SNAPC2Q13487 334 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 TXNRD3Q86VQ6 643 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 NOSTRINQ8IVI9 506 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 CCDC65Q8IXS2 484 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 ZBTB9Q96C00 473 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 TEKT3Q9BXF9 490 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 FBXO40Q9UH90 709 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 DDX25Q9UHL0 483 aaKnown RBP14.5□□□□□ -0.09
PTCH1-207ENST00000429896 UQCRHLA0A096LP55 91 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 SORBS3O60504 671 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 UQCRHP07919 91 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 SBK1Q52WX2 424 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 CPLX3Q8WVH0 158 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 AP5M1Q9H0R1 490 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 BCCIPQ9P287 314 aaKnown RBP eCLIP14.5□□□□□ -0.09
PTCH1-207ENST00000429896 RABGAP1Q9Y3P9 1069 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 KIAA0754O94854 1291 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 CCDC112Q8NEF3 446 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 DNM3Q9UQ16 869 aa14.5□□□□□ -0.09
PTCH1-207ENST00000429896 SPDYE2BA6NHP3 402 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L15C9J2P7 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L13C9JLJ4 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L11C9JVI0 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L18D6R9N7 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L22D6RA61 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L17D6RBQ6 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L19D6RCP7 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L20D6RJB6 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 SPDYE6P0CI01 402 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 USP17L24Q0WX57 530 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 FAM47CQ5HY64 1035 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 OTUD6AQ7L8S5 288 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 RBM46Q8TBY0 533 aaKnown RBP14.49□□□□□ -0.09
PTCH1-207ENST00000429896 SNAP25P60880 206 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 CACNA2D4Q7Z3S7 1137 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 FERMT2Q96AC1 680 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 INCENPQ9NQS7 918 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 ESPNB1AK53 854 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 ZEB2O60315 1214 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 NEDD1Q8NHV4 660 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 COA7Q96BR5 231 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 PSMA7O14818 248 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 PRPF3O43395 683 aaKnown RBP14.49□□□□□ -0.09
PTCH1-207ENST00000429896 CUTAO60888 179 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 ZDHHC15Q96MV8 337 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 TRPC6Q9Y210 931 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 NMT2O60551 498 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 MTMR2Q13614 643 aa14.49□□□□□ -0.09
PTCH1-207ENST00000429896 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.49□□□□□ -0.09
PTCH1-207ENST00000429896 ELP1O95163 1332 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 HMGCS2P54868 508 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 CCDC169A6NNP5 214 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 DTNBO60941 627 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 HOXD10P28358 340 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 PRMT6Q96LA8 375 aaPredicted RBP14.48□□□□□ -0.09
PTCH1-207ENST00000429896 DACT1Q9NYF0 836 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 SCAF8Q9UPN6 1271 aaKnown RBP14.48□□□□□ -0.09
PTCH1-207ENST00000429896 PPP2R3BQ9Y5P8 575 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 C19orf81C9J6K1 198 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 UBXN2AP68543 259 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 SEPT14Q6ZU15 432 aa14.48□□□□□ -0.09
PTCH1-207ENST00000429896 HS2ST1Q7LGA3 356 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms