RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 GPR108Q9NPR9 543 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 HESX1Q9UBX0 185 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 MED23Q9ULK4 1368 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 USP17L12C9JPN9 530 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 USP17L21D6R901 530 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 SEC24BO95487 1268 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 RBM6P78332 1123 aaKnown RBP14.07□□□□□ -0.16
LDB3-205ENST00000429277 KRT71Q3SY84 523 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 ARHGEF2Q92974 986 aaKnown RBP14.07□□□□□ -0.16
LDB3-205ENST00000429277 JPH2Q9BR39 696 aaPredicted RBP14.07□□□□□ -0.16
LDB3-205ENST00000429277 KAT6BQ8WYB5 2073 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 SCG2P13521 617 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 TRAPPC10P48553 1259 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 BIRC2Q13490 618 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 C2CD5Q86YS7 1000 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 SMAP1Q8IYB5 467 aaPredicted RBP14.07□□□□□ -0.16
LDB3-205ENST00000429277 PPP4R1Q8TF05 950 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 CNKSR1Q969H4 720 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 CSRNP1Q96S65 589 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 VPS37BQ9H9H4 285 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 ATP7AQ04656 1500 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 XPOTO43592 962 aaKnown RBP14.07□□□□□ -0.16
LDB3-205ENST00000429277 TMOD1P28289 359 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 APBA1Q02410 837 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 UBE3CQ15386 1083 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 TYW1BQ6NUM6 668 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 FBXO11Q86XK2 927 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 ZNF408Q9H9D4 720 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 FAM207AQ9NSI2 230 aaPredicted RBP14.07□□□□□ -0.16
LDB3-205ENST00000429277 TBC1D7Q9P0N9 293 aa14.07□□□□□ -0.16
LDB3-205ENST00000429277 RIOK3O14730 519 aaKnown RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 SH3BGRP55822 239 aaPredicted RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 RNASE9P60153 205 aaKnown RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 TCP10Q12799 353 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 TRIM50Q86XT4 487 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 IFT122Q9HBG6 1241 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 NRBP2Q9NSY0 501 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.06□□□□□ -0.16
LDB3-205ENST00000429277 BZW2Q9Y6E2 419 aaKnown RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 PALM3A6NDB9 673 aaPredicted RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 RGS16O15492 202 aaPredicted RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 PFKFB1P16118 471 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 PDE6CP51160 858 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 MORC3Q14149 939 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 KRBA2Q6ZNG9 492 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 PNMA1Q8ND90 353 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 MYO1AQ9UBC5 1043 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 hCG_1984214I3L0E3 225 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 STAM2O75886 525 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 MAN1A1P33908 653 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 GTF2IP78347 998 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 IRX5P78411 483 aaPredicted RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 ARHGAP44Q17R89 818 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 PALM2Q8IXS6 379 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 ZNF713Q8N859 430 aaPredicted RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 U2AF1L4Q8WU68 220 aaKnown RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 VCX3AQ9NNX9 186 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 TBC1D8O95759 1140 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 KRT81Q14533 505 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 KIF22Q14807 665 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 FAM160B1Q5W0V3 765 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 EXOC8Q8IYI6 725 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 ORAI2Q96SN7 254 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 BLMP54132 1417 aaPredicted RBP14.06□□□□□ -0.16
LDB3-205ENST00000429277 ATP10DQ9P241 1426 aa14.06□□□□□ -0.16
LDB3-205ENST00000429277 EIF3CLB5ME19 914 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 PDE6AP16499 860 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 HSPA2P54652 639 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 EIF3CQ99613 913 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 NCAPGQ9BPX3 1015 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 LMBRD1Q9NUN5 540 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 PPP2R5AQ15172 486 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 FAM178BQ8IXR5 827 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 FAM98CQ17RN3 349 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 GPATCH4Q5T3I0 446 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 FAM102BQ5T8I3 360 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 MIPOL1Q8TD10 442 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 TSC1Q92574 1164 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 KRT12Q99456 494 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 RABGAP1Q9Y3P9 1069 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 JAK2O60674 1132 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 STX2P32856 288 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 LMNB2Q03252 620 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 FAM173BQ6P4H8 233 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 ZSWIM6Q9HCJ5 1215 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 DDX41Q9UJV9 622 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 GOLGA8KD6RF30 607 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 CIAO1O76071 339 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 NAA25Q14CX7 972 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 CERKLQ49MI3 558 aaPredicted RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 FAM47AQ5JRC9 791 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 MRRFQ96E11 262 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 TRIM11Q96F44 468 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 XPO4Q9C0E2 1151 aaKnown RBP14.05□□□□□ -0.16
LDB3-205ENST00000429277 NLRC4Q9NPP4 1024 aa14.05□□□□□ -0.16
LDB3-205ENST00000429277 PTPRTO14522 1441 aa14.04□□□□□ -0.16
LDB3-205ENST00000429277 FAM135BQ49AJ0 1406 aa14.04□□□□□ -0.16
LDB3-205ENST00000429277 TNKSO95271 1327 aa14.04□□□□□ -0.16
LDB3-205ENST00000429277 DMP1Q13316 513 aaPredicted RBP14.04□□□□□ -0.16
LDB3-205ENST00000429277 TFDP1Q14186 410 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms