RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 FZD9O00144 591 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 PMM2O15305 246 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 GSTP1P09211 210 aaKnown RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 DCAF15Q66K64 600 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ENAHQ8N8S7 591 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 FUBP3Q96I24 572 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 LACRTQ9GZZ8 138 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ZHX3Q9H4I2 956 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 SAP30BPQ9UHR5 308 aaKnown RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 IPPQ9Y573 584 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 FANCIQ9NVI1 1328 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 PRAMEF27A3QJZ7 478 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ZNF500O60304 480 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ESRRAP11474 423 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 HOXD8P13378 290 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ADCYAP1R1P41586 468 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 MINDY4Q4G0A6 757 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ARHGAP29Q52LW3 1261 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ZNF697Q5TEC3 545 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 IQSEC1Q6DN90 963 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ABHD17CQ6PCB6 329 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ZNF513Q8N8E2 541 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 ELAC2Q9BQ52 826 aaKnown RBP6.32□□□□□ -1.4
VPS13A-207ENST00000419472 PAGR1Q9BTK6 254 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 PLCB1Q9NQ66 1216 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 SOX13Q9UN79 622 aa6.32□□□□□ -1.4
VPS13A-207ENST00000419472 FRMPD2Q68DX3 1309 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 CAPNS1P04632 268 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 ASGR2P07307 311 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 FGFR1P11362 822 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 BMP2P12643 396 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 SLC19A1P41440 591 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 CDCA2Q69YH5 1023 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 PCGF5Q86SE9 256 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 NEUROD6Q96NK8 337 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 SH2B1Q9NRF2 756 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 CACNA2D2Q9NY47 1150 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 CSADQ9Y600 493 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 TEX14Q8IWB6 1497 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 WDR7Q9Y4E6 1490 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 ASXL2Q76L83 1435 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 ANKRD34BA5PLL1 514 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 DCDC2CA8MYV0 355 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 ATXN7O15265 892 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 ASLP04424 464 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 MAPTP10636 758 aaKnown RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 IGFALSP35858 605 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 PPM1FP49593 454 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 SLC4A8Q2Y0W8 1093 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 CPA6Q8N4T0 437 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 EMILIN2Q9BXX0 1053 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 INO80BQ9C086 356 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 NGRNQ9NPE2 291 aaKnown RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 PHTF1Q9UMS5 762 aa6.31□□□□□ -1.4
VPS13A-207ENST00000419472 SETD1BQ9UPS6 1966 aaKnown RBP6.31□□□□□ -1.4
VPS13A-207ENST00000419472 TCRBV16S1A1N1A0A5B0 115 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CCER2I3L3R5 266 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 NPTXRO95502 500 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 FAM157BP0CG42 384 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CDC25BP30305 580 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 ECE1P42892 770 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 NRLP54845 237 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 ERVK-21P61565 698 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 HDGFL2Q7Z4V5 671 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CMIPQ8IY22 773 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 HPS1Q92902 700 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 ANAPC4Q9UJX5 808 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 EPRSP07814 1512 aaKnown RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 PPRC1Q5VV67 1664 aaKnown RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 SNUPNO95149 360 aaKnown RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 MAP3K6O95382 1288 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CD33P20138 364 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CCND1P24385 295 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CHAF1AQ13111 956 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 STK3Q13188 491 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 MAPRE1Q15691 268 aaKnown RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 EFCAB2Q5VUJ9 269 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 C1orf228Q6PIY5 440 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 CPXCR1Q8N123 301 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 SNIP1Q8TAD8 396 aaKnown RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 ACSF2Q96CM8 615 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 WDR89Q96FK6 387 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-207ENST00000419472 SCINQ9Y6U3 715 aa6.3□□□□□ -1.4
VPS13A-207ENST00000419472 DLX3O60479 287 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 F11P03951 625 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 LDHCP07864 332 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 EIF2AK2P19525 551 aaKnown RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 TNP2Q05952 138 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 TBC1D8BQ0IIM8 1120 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 MLECQ14165 292 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 GBX1Q14549 363 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 NTRK3Q16288 839 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 INAVAQ3KP66 663 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 LCE2DQ5TA82 110 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 SPRYD7Q5W111 196 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 C12orf40Q86WS4 652 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 MORC2Q9Y6X9 1032 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-207ENST00000419472 HECW1Q76N89 1606 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 CRTAMO95727 393 aa6.29□□□□□ -1.4
VPS13A-207ENST00000419472 ITGBL1O95965 494 aaPredicted RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms