RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PLS1Q14651 629 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 TMEM132BQ14DG7 1078 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 ARHGEF6Q15052 776 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 TSGA10IPQ3SY00 556 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 TTBK2Q6IQ55 1244 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 FAM160B2Q86V87 743 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 TNS4Q8IZW8 715 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 REPS2Q8NFH8 660 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 TCEANC2Q96MN5 208 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 JAKMIP1Q96N16 626 aaKnown RBP14.62□□□□□ -0.07
SKA1-203ENST00000417656 USP26Q9BXU7 913 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 LRRC2Q9BYS8 371 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 SPATC1LQ9H0A9 340 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 GPCPD1Q9NPB8 672 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 GOLGA8HP0CJ92 632 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 SLC16A2P36021 539 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 CCNA1P78396 465 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 PRKCZQ05513 592 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 C8orf34Q49A92 452 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 WDR78Q5VTH9 848 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 PRPF38AQ8NAV1 312 aaKnown RBP14.61□□□□□ -0.07
SKA1-203ENST00000417656 IGDCC4Q8TDY8 1250 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 MOV10L1Q9BXT6 1211 aaKnown RBP14.61□□□□□ -0.07
SKA1-203ENST00000417656 LY9Q9HBG7 655 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 SRRDQ9UH36 339 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 ZNF214Q9UL59 606 aaPredicted RBP14.61□□□□□ -0.07
SKA1-203ENST00000417656 PTPN22Q9Y2R2 807 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 PTCH2Q9Y6C5 1203 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 DOCK3Q8IZD9 2030 aa14.61□□□□□ -0.07
SKA1-203ENST00000417656 PLA2G6O60733 806 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 GNRH1P01148 92 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 CPA1P15085 419 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 MAPK4P31152 587 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 SNAP25P60880 206 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 SYDE2Q5VT97 1194 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 FBXO46Q6PJ61 603 aaPredicted RBP14.6□□□□□ -0.07
SKA1-203ENST00000417656 GPR142Q7Z601 462 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 CCAR1Q8IX12 1150 aaKnown RBP14.6□□□□□ -0.07
SKA1-203ENST00000417656 CHURC1Q8WUH1 139 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 COA7Q96BR5 231 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 TMEM87BQ96K49 555 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 CPVLQ9H3G5 476 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 SLC38A10Q9HBR0 1119 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 CWC22Q9HCG8 908 aaKnown RBP14.6□□□□□ -0.07
SKA1-203ENST00000417656 PRR12Q9ULL5 1215 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 GABRQQ9UN88 632 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 CTDP1Q9Y5B0 961 aaPredicted RBP14.6□□□□□ -0.07
SKA1-203ENST00000417656 WDR19Q8NEZ3 1342 aa14.6□□□□□ -0.07
SKA1-203ENST00000417656 HTTP42858 3142 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 ZBED4O75132 1171 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 SEC24BO95487 1268 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 PARP1P09874 1014 aaKnown RBP14.59□□□□□ -0.07
SKA1-203ENST00000417656 HOXD10P28358 340 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 PKN2Q16513 984 aaKnown RBP14.59□□□□□ -0.07
SKA1-203ENST00000417656 ASPRV1Q53RT3 343 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 GPATCH4Q5T3I0 446 aaKnown RBP14.59□□□□□ -0.07
SKA1-203ENST00000417656 SNRNP48Q6IEG0 339 aaKnown RBP14.59□□□□□ -0.07
SKA1-203ENST00000417656 BTNL9Q6UXG8 535 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 ZNF654Q8IZM8 581 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 CPXCR1Q8N123 301 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 SHCBP1Q8NEM2 672 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 MTA3Q9BTC8 594 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 MYL10Q9BUA6 226 aa14.59□□□□□ -0.07
SKA1-203ENST00000417656 RAVER2Q9HCJ3 691 aaKnown RBP14.59□□□□□ -0.07
SKA1-203ENST00000417656 TAL1P17542 331 aaPredicted RBP14.58□□□□□ -0.08
SKA1-203ENST00000417656 ERCC3P19447 782 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 STAT3P40763 770 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 FLT3LGP49771 235 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 PRMT2P55345 433 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 EXOSC10Q01780 885 aaKnown RBP14.58□□□□□ -0.08
SKA1-203ENST00000417656 GRM4Q14833 912 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 CCDC174Q6PII3 467 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 BLOC1S2Q6QNY1 142 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 NFXL1Q6ZNB6 911 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 DHX32Q7L7V1 743 aaKnown RBP14.58□□□□□ -0.08
SKA1-203ENST00000417656 PLEKHH3Q7Z736 793 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 NCAPG2Q86XI2 1143 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 RIOX2Q8IUF8 465 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 TEX13BQ9BXU2 312 aa14.58□□□□□ -0.08
SKA1-203ENST00000417656 RBBP6Q7Z6E9 1792 aaKnown RBP14.57□□□□□ -0.08
SKA1-203ENST00000417656 CCDC69A6NI79 296 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 DDAH1O94760 285 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 HMGB1P09429 215 aaKnown RBP14.57□□□□□ -0.08
SKA1-203ENST00000417656 CASTP20810 708 aaKnown RBP14.57□□□□□ -0.08
SKA1-203ENST00000417656 SLC4A3P48751 1232 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 TROAPQ12815 778 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 CATIPQ7Z7H3 387 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 RAB11FIP4Q86YS3 637 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 STAG2Q8N3U4 1231 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 SPDYE1Q8NFV5 336 aaPredicted RBP14.57□□□□□ -0.08
SKA1-203ENST00000417656 RAET1EQ8TD07 263 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 NUP133Q8WUM0 1156 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 SOCS4Q8WXH5 440 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 UBA5Q9GZZ9 404 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 RANBP17Q9H2T7 1088 aaKnown RBP14.57□□□□□ -0.08
SKA1-203ENST00000417656 HPS5Q9UPZ3 1129 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 RIPK3Q9Y572 518 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 IVNS1ABPQ9Y6Y0 642 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 ZNF536O15090 1300 aa14.57□□□□□ -0.08
SKA1-203ENST00000417656 MYH6P13533 1939 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms