RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RTFDC1Q9BY42 306 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 DNAI2Q9GZS0 605 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 PCDHA4Q9UN74 947 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 PPP1R2P41236 205 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 TXKP42681 527 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SYCP1Q15431 976 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 PIGSQ96S52 555 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 FBXO40Q9UH90 709 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 FAM196BA6NMK8 535 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 BTBD18B2RXH4 712 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 F5H6K3 240 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 CCT6AP40227 531 aaKnown RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 KLRC3Q07444 240 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SPP2Q13103 211 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 TOB2Q14106 344 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 FKBP1CQ5VVH2 108 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SAMD7Q7Z3H4 446 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SYCP3Q8IZU3 236 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 LEO1Q8WVC0 666 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 LPAR1Q92633 364 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 EPB41L4AQ9HCS5 686 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 LUC7LQ9NQ29 371 aaKnown RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 ARGLU1Q9NWB6 273 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 KDM3BQ7LBC6 1761 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 C19orf81C9J6K1 198 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 NOP56O00567 594 aaKnown RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 TNNT1P13805 278 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 AFMP43652 599 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 FKBP15Q5T1M5 1219 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SV2BQ7L1I2 683 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 FASTKD5Q7L8L6 764 aaKnown RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SLFN12Q8IYM2 578 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 PRMT6Q96LA8 375 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 MTMR4Q9NYA4 1195 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 PSMA7O14818 248 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 EXOSC10Q01780 885 aaKnown RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 CETN1Q12798 172 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 CDC37Q16543 378 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 TRMT1LQ7Z2T5 733 aaKnown RBP9.59□□□□□ -0.87
SYNE1-211ENST00000413186 SLF1Q9BQI6 1058 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 EHD4Q9H223 541 aa9.59□□□□□ -0.87
SYNE1-211ENST00000413186 LAD1O00515 517 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 COPB2P35606 906 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 SLC16A2P36021 539 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 MAP3K9P80192 1104 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 PPP1R18Q6NYC8 613 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 USP37Q86T82 979 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 TXLNBQ8N3L3 684 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 PRPF38AQ8NAV1 312 aaKnown RBP9.58□□□□□ -0.88
SYNE1-211ENST00000413186 NT5C3AQ9H0P0 336 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 KCNH3Q9ULD8 1083 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 ZBTB5O15062 677 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 CTNND1O60716 968 aaKnown RBP9.58□□□□□ -0.88
SYNE1-211ENST00000413186 FAM13AO94988 1023 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 VEGFAP15692 232 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-211ENST00000413186 TRIM21P19474 475 aaKnown RBP9.58□□□□□ -0.88
SYNE1-211ENST00000413186 ZNF165P49910 485 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 CDHR1Q96JP9 859 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 GPHNQ9NQX3 736 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-211ENST00000413186 KCNG1Q9UIX4 513 aa9.58□□□□□ -0.88
SYNE1-211ENST00000413186 BIN1O00499 593 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 GAS7O60861 476 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 VIL1P09327 827 aaKnown RBP9.57□□□□□ -0.88
SYNE1-211ENST00000413186 RASA1P20936 1047 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 SPAG1Q07617 926 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 INF2Q27J81 1249 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 CCDC65Q8IXS2 484 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 VTI1AQ96AJ9 217 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 AZI2Q9H6S1 392 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 SPC25Q9HBM1 224 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 FAM173BQ6P4H8 233 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 STOX1Q6ZVD7 989 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 GIMAP7Q8NHV1 300 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 SNX29Q8TEQ0 813 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 MAP3K14Q99558 947 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 INCENPQ9NQS7 918 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 ZBTB21Q9ULJ3 1066 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 KDM3AQ9Y4C1 1321 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 GOLGA6L9A6NEM1 432 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 MMP1P03956 469 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 EPHX2P34913 555 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 GSDMDP57764 484 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 ZNF445P59923 1031 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 ZNF592Q92610 1267 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 OR52Z1P0C646 297 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 PDE4DQ08499 809 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 NCBP1Q09161 790 aaKnown RBP9.57□□□□□ -0.88
SYNE1-211ENST00000413186 FAM83BQ5T0W9 1011 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 GPBP1L1Q9HC44 474 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-211ENST00000413186 PKD2L1Q9P0L9 805 aa9.57□□□□□ -0.88
SYNE1-211ENST00000413186 TCRBV5S4A2TA0A5A2 114 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L15C9J2P7 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L13C9JLJ4 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L11C9JVI0 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L18D6R9N7 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L22D6RA61 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L17D6RBQ6 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L19D6RCP7 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 USP17L20D6RJB6 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 WDR46O15213 610 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms