RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 USP17L15C9J2P7 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L13C9JLJ4 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L11C9JVI0 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L18D6R9N7 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L22D6RA61 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L17D6RBQ6 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L19D6RCP7 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L20D6RJB6 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 PRPF3O43395 683 aaKnown RBP20.94■□□□□ 0.94
SDC1-203ENST00000403076 FLOT1O75955 427 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 CETPP11597 493 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 APLP1P51693 650 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 USP17L24Q0WX57 530 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 ADGRF4Q8IZF3 695 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 KIFC2Q96AC6 838 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 RRP36Q96EU6 259 aaKnown RBP20.94■□□□□ 0.94
SDC1-203ENST00000403076 RNF26Q9BY78 433 aaPredicted RBP20.94■□□□□ 0.94
SDC1-203ENST00000403076 RIOX1Q9H6W3 641 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 hCG_1642624A0A1W2PR95 340 aa20.93■□□□□ 0.94
SDC1-203ENST00000403076 BTNL9Q6UXG8 535 aa20.93■□□□□ 0.94
SDC1-203ENST00000403076 HOMER1Q86YM7 354 aa20.93■□□□□ 0.94
SDC1-203ENST00000403076 CCDC102AQ96A19 550 aa20.93■□□□□ 0.94
SDC1-203ENST00000403076 SLF1Q9BQI6 1058 aa20.93■□□□□ 0.94
SDC1-203ENST00000403076 CWC22Q9HCG8 908 aaKnown RBP20.93■□□□□ 0.94
SDC1-203ENST00000403076 FBXO28Q9NVF7 368 aa20.93■□□□□ 0.94
SDC1-203ENST00000403076 RBM27Q9P2N5 1060 aaKnown RBP20.93■□□□□ 0.94
SDC1-203ENST00000403076 SEC63Q9UGP8 760 aaKnown RBP20.93■□□□□ 0.94
SDC1-203ENST00000403076 CCL15-CCL14A0A0B4J2E2 113 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 CYTH3O43739 400 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 PLA2G6O60733 806 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 DEXIO95424 95 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 GRM1Q13255 1194 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 CCL15Q16663 113 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 SLC35G1Q2M3R5 365 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 TREML2Q5T2D2 321 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 PRPF38AQ8NAV1 312 aaKnown RBP20.92■□□□□ 0.94
SDC1-203ENST00000403076 WASF1Q92558 559 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 PIGSQ96S52 555 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 JMJD4Q9H9V9 463 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 CREBZFQ9NS37 354 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 PRR12Q9ULL5 1215 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 CTDP1Q9Y5B0 961 aaPredicted RBP20.92■□□□□ 0.94
SDC1-203ENST00000403076 STK36Q9NRP7 1315 aa20.92■□□□□ 0.94
SDC1-203ENST00000403076 BAZ2BQ9UIF8 2168 aaKnown RBP20.91■□□□□ 0.94
SDC1-203ENST00000403076 FDPSP14324 419 aaKnown RBP20.91■□□□□ 0.94
SDC1-203ENST00000403076 PABPC4Q13310 644 aaKnown RBP eCLIP20.91■□□□□ 0.94
SDC1-203ENST00000403076 CATSPERGQ6ZRH7 1159 aa20.91■□□□□ 0.94
SDC1-203ENST00000403076 HHIPL1Q96JK4 782 aa20.91■□□□□ 0.94
SDC1-203ENST00000403076 SLC10A3P09131 477 aa20.9■□□□□ 0.94
SDC1-203ENST00000403076 MS4A4AQ96JQ5 239 aa20.9■□□□□ 0.94
SDC1-203ENST00000403076 AGTPBP1Q9UPW5 1226 aa20.9■□□□□ 0.94
SDC1-203ENST00000403076 FOSBP53539 338 aa20.89■□□□□ 0.94
SDC1-203ENST00000403076 SNAP25P60880 206 aa20.89■□□□□ 0.94
SDC1-203ENST00000403076 IRX3P78415 501 aaPredicted RBP20.89■□□□□ 0.94
SDC1-203ENST00000403076 COG2Q14746 738 aa20.89■□□□□ 0.94
SDC1-203ENST00000403076 DEFB115Q30KQ5 88 aa20.89■□□□□ 0.94
SDC1-203ENST00000403076 LARP1BQ659C4 914 aaKnown RBP20.89■□□□□ 0.94
SDC1-203ENST00000403076 ALG1Q9BT22 464 aa20.89■□□□□ 0.94
SDC1-203ENST00000403076 PPP1R9AQ9ULJ8 1098 aa20.89■□□□□ 0.94
SDC1-203ENST00000403076 PTPRFP10586 1907 aa20.89■□□□□ 0.93
SDC1-203ENST00000403076 PNMA6FA0A0J9YX94 578 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 ZBTB5O15062 677 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 PDCP20941 246 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 OSBPP22059 807 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 MOGSQ13724 837 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 CDC37Q16543 378 aaPredicted RBP20.88■□□□□ 0.93
SDC1-203ENST00000403076 BRI3BPQ8WY22 251 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 HOXC10Q9NYD6 342 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 MANSC4A6NHS7 340 aaPredicted RBP20.88■□□□□ 0.93
SDC1-203ENST00000403076 ZBED4O75132 1171 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 SCG2P13521 617 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 HOXA7P31268 230 aaPredicted RBP20.88■□□□□ 0.93
SDC1-203ENST00000403076 PKN1Q16512 942 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 PFKFB3Q16875 520 aaPredicted RBP20.88■□□□□ 0.93
SDC1-203ENST00000403076 GPAT2Q6NUI2 795 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 AIFM3Q96NN9 605 aa20.88■□□□□ 0.93
SDC1-203ENST00000403076 XBP1P17861 261 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 DSG3P32926 999 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 TRIM29Q14134 588 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 QRICH1Q2TAL8 776 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 CYP4F22Q6NT55 531 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 CCDC174Q6PII3 467 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 HEATR3Q7Z4Q2 680 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 ATG4CQ96DT6 458 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 C8orf76Q96K31 380 aa20.87■□□□□ 0.93
SDC1-203ENST00000403076 BTBD19C9JJ37 291 aa20.86■□□□□ 0.93
SDC1-203ENST00000403076 FDX1P10109 184 aa20.86■□□□□ 0.93
SDC1-203ENST00000403076 ANKRD23Q86SG2 305 aa20.86■□□□□ 0.93
SDC1-203ENST00000403076 GPKOWQ92917 476 aaPredicted RBP eCLIP20.86■□□□□ 0.93
SDC1-203ENST00000403076 MTMR8Q96EF0 704 aa20.86■□□□□ 0.93
SDC1-203ENST00000403076 ASCC2Q9H1I8 757 aaPredicted RBP20.86■□□□□ 0.93
SDC1-203ENST00000403076 MYPNQ86TC9 1320 aa20.85■□□□□ 0.93
SDC1-203ENST00000403076 RASSF10A6NK89 507 aa20.85■□□□□ 0.93
SDC1-203ENST00000403076 FAM155AB1AL88 458 aaPredicted RBP20.85■□□□□ 0.93
SDC1-203ENST00000403076 H3BQV1 296 aa20.85■□□□□ 0.93
SDC1-203ENST00000403076 IFFO2Q5TF58 517 aa20.85■□□□□ 0.93
SDC1-203ENST00000403076 FBXO11Q86XK2 927 aa20.85■□□□□ 0.93
SDC1-203ENST00000403076 P2RX7Q99572 595 aaKnown RBP20.85■□□□□ 0.93
SDC1-203ENST00000403076 RANBP17Q9H2T7 1088 aaKnown RBP20.85■□□□□ 0.93
SDC1-203ENST00000403076 PNMA3Q9UL41 463 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms