RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 MRE11P49959 708 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 LONRF3Q496Y0 759 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 C15orf52Q6ZUT6 534 aaKnown RBP9.23□□□□□ -0.93
LIMS1-203ENST00000393310 PRMT6Q96LA8 375 aaPredicted RBP9.23□□□□□ -0.93
LIMS1-203ENST00000393310 TEX13BQ9BXU2 312 aa9.23□□□□□ -0.93
LIMS1-203ENST00000393310 HNRNPUQ00839 825 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMS1-203ENST00000393310 RBBP5Q15291 538 aaKnown RBP9.22□□□□□ -0.93
LIMS1-203ENST00000393310 ACSF2Q96CM8 615 aaPredicted RBP9.22□□□□□ -0.93
LIMS1-203ENST00000393310 CFHR5Q9BXR6 569 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 UTRNP46939 3433 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 C4AP0C0L4 1744 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 EIF3JO75822 258 aaKnown RBP9.22□□□□□ -0.93
LIMS1-203ENST00000393310 CIAO1O76071 339 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 DNM2P50570 870 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 IKBKEQ14164 716 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 RNF214Q8ND24 703 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 MIPOL1Q8TD10 442 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 CCDC12Q8WUD4 166 aaPredicted RBP9.22□□□□□ -0.93
LIMS1-203ENST00000393310 KAT14Q9H8E8 782 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 INCENPQ9NQS7 918 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 STK24Q9Y6E0 443 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 ELNP15502 786 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 ZSCAN20P17040 1043 aaPredicted RBP9.22□□□□□ -0.93
LIMS1-203ENST00000393310 TMOD1P28289 359 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 CCDC173Q0VFZ6 552 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 NFKBIBQ15653 356 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 OLFM4Q6UX06 510 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 DDX12PQ92771 950 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 NCAPGQ9BPX3 1015 aa9.22□□□□□ -0.93
LIMS1-203ENST00000393310 TNFRSF10AO00220 468 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 DNM1LO00429 736 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 TLL1O43897 1013 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 RANBP6O60518 1105 aaKnown RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 BACE1P56817 501 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 MOB2Q70IA6 237 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 SPATA5Q8NB90 893 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 C7orf43Q8WVR3 580 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 TCHPQ9BT92 498 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 SAP30BPQ9UHR5 308 aaKnown RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 PFASO15067 1338 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 IRF6O14896 467 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 TPM1P09493 284 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 XRCC5P13010 732 aaKnown RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 ALAS1P13196 640 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 FERMT2Q96AC1 680 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 TSEN34Q9BSV6 310 aaKnown RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 ACAD9Q9H845 621 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 CHCHD3Q9NX63 227 aaKnown RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 ORC3Q9UBD5 711 aaPredicted RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 ARPP21Q9UBL0 812 aaPredicted RBP9.21□□□□□ -0.93
LIMS1-203ENST00000393310 SH3BP1Q9Y3L3 701 aa9.21□□□□□ -0.93
LIMS1-203ENST00000393310 H7C1W4 665 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 KIAA1841Q6NSI8 718 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 BRI3BPQ8WY22 251 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 RGPD3A6NKT7 1758 aaPredicted RBP9.21□□□□□ -0.94
LIMS1-203ENST00000393310 RGPD4Q7Z3J3 1758 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 TERF1P54274 439 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 KIAA1328Q86T90 577 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 ENGASEQ8NFI3 743 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 SMARCC2Q8TAQ2 1214 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 SLC9A7Q96T83 725 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 SLF1Q9BQI6 1058 aa9.21□□□□□ -0.94
LIMS1-203ENST00000393310 CCDC171Q6TFL3 1326 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ERVK-9P63128 1117 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ERVK-24P63145 666 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 GIMAP8Q8ND71 665 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 CTCFLQ8NI51 663 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ATXN2LQ8WWM7 1075 aaKnown RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ADAMTS8Q9UP79 889 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 KCNA1Q09470 495 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 FAM114A1Q8IWE2 563 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 CCDC26Q8TAB7 109 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 KIFC2Q96AC6 838 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 RMDN2Q96LZ7 410 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ABHD16BQ9H3Z7 469 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 FEM1BQ9UK73 627 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 BTAF1O14981 1849 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 NRAPQ86VF7 1730 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 USP2O75604 605 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 IL1R1P14778 569 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 SMAD3P84022 425 aaKnown RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 MTMR2Q13614 643 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 JPH2Q9BR39 696 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 PPP1R12CQ9BZL4 782 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 ASCC2Q9H1I8 757 aaPredicted RBP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 AATFQ9NY61 560 aaKnown RBP eCLIP9.2□□□□□ -0.94
LIMS1-203ENST00000393310 PCDHB12Q9Y5F1 795 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 SLC4A4Q9Y6R1 1079 aa9.2□□□□□ -0.94
LIMS1-203ENST00000393310 MCAMP43121 646 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 PRPF38AQ8NAV1 312 aaKnown RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 STAMQ92783 540 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 SEPT4O43236 478 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 TNFAIP2Q03169 654 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 NOL9Q5SY16 702 aaKnown RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 BTN2A1Q7KYR7 527 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 CLMNQ96JQ2 1002 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 ZMAT2Q96NC0 199 aaKnown RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 MTG1Q9BT17 334 aaPredicted RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 RTEL1Q9NZ71 1219 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms